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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "schematicpy"
version = "1.0.0"
description = "Package for biomedical data model and metadata ingress management"
authors = [
"Milen Nikolov <[email protected]>",
"Sujay Patil <[email protected]>",
"Bruno Grande <[email protected]>",
"Robert Allaway <[email protected]>",
"Xengie Doan <[email protected]>",
]
readme = "README.md"
homepage = "https://github.com/Sage-Bionetworks/schematic"
repository = "https://github.com/Sage-Bionetworks/schematic"
documentation = "https://github.com/Sage-Bionetworks/schematic"
# Additional keywords: annotation, knowledge graph, ontology, data ingress
keywords = ["schema", "metadata", "validation", "data model", "linked data"]
classifiers = [
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Science/Research",
"Topic :: Software Development :: Libraries :: Python Modules"
]
packages = [
{ include = "schematic" }
]
[tool.poetry.scripts]
schematic = "schematic.__main__:main"
[tool.poetry.dependencies]
python = "^3.7.1"
click = "^7.1.2"
click-log = "^0.3.2"
google-api-python-client = "^1.12.8"
google-auth-httplib2 = "^0.0.4"
google-auth-oauthlib = "^0.4.2"
graphviz = "^0.16"
importlib-metadata = {version = "^1.6.0", python = "<3.8"}
inflection = "^0.5.1"
jsonschema = "^3.2.0"
networkx = "^2.5"
numpy = "1.21.1"
oauth2client = "<4.0.0" # Specified because of bug in version ^4.0.0
pandas = "^1.2.1"
pygsheets = "^2.0.4"
PyYAML = "^5.4.1"
rdflib = "^5.0.0"
setuptools = "^52.0.0"
synapseclient = "^2.4.0"
toml = "^0.10.2"
Flask = "^1.1.4"
connexion = {extras = ["swagger-ui"], version = "^2.8.0"}
[tool.poetry.dev-dependencies]
pytest = "^6.2.2"
pytest-cov = "^2.11.1"
pytest-mock = "^3.5.1"
flake8 = "^3.8.4"
python-dotenv = "^0.15.0"
black = {version = "^20.8b1", allow-prereleases = true}
[tool.black]
line-length = 88
target-version = ['py37']
include = '\.pyi?$'
exclude = '''
(
/(
\.eggs
| \.git
| \.venv
| dist
)/
)
'''
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.pytest.ini_options]
minversion = "6.0"
addopts = "--verbose"
testpaths = [
"tests"
]
filterwarnings = [
"ignore::DeprecationWarning"
]
markers = [
"""\
google_credentials_needed: marks tests requiring \
Google credentials (skipped on GitHub CI)\
""",
]