Installation problem

[povolann]

Hi,

I have tried to install RTK using your script and I have problem with CMake, but I'm not really sure what should I do. I get this error after running your script:

anya@anya-ntb:~/Rekonstrukce$ ./auto_build_RTK.sh
Cloning into 'ITK'...
remote: Counting objects: 426430, done.
remote: Compressing objects: 100% (77182/77182), done.
remote: Total 426430 (delta 345435), reused 426363 (delta 345395)
Receiving objects: 100% (426430/426430), 115.22 MiB | 2.57 MiB/s, done.
Resolving deltas: 100% (345435/345435), done.
Checking connectivity... done.
CMake Error: The source directory "/home/anya/Rekonstrukce/ITK-bin" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
./auto_build_RTK.sh: line 16: -DCMAKE_CXX_FLAGS=-fPIC: command not found
make: *** No targets specified and no makefile found. Stop.
Cloning into 'RTK'...
remote: Counting objects: 26631, done.
remote: Compressing objects: 100% (197/197), done.
remote: Total 26631 (delta 147), reused 185 (delta 106), pack-reused 26328
Receiving objects: 100% (26631/26631), 11.91 MiB | 2.39 MiB/s, done.
Resolving deltas: 100% (17996/17996), done.
Checking connectivity... done.
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for isnan
-- Looking for isnan - found
CMake Error at CMakeLists.txt:150 (find_package):
By not providing "FindITK.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "ITK", but
CMake did not find one.
Could not find a package configuration file provided by "ITK" (requested version 4.12.0) with any of the following names:
ITKConfig.cmake
itk-config.cmake
Add the installation prefix of "ITK" to CMAKE_PREFIX_PATH or set "ITK_DIR" to a directory containing one of the above files. If "ITK" provides a separate development package or SDK, be sure it has been installed.
-- Configuring incomplete, errors occurred!
See also "/home/anya/Rekonstrukce/RTK-bin/CMakeFiles/CMakeOutput.log".
make: *** No targets specified and no makefile found. Stop.
./auto_build_RTK.sh: line 36: cd: bin: No such file or directory
./auto_build_RTK.sh: line 37: ./HelloWorld: No such file or directory

[parishan]

Hi,

I have the same problem. Could you fix it, Povolann?

[parishan]

Hi,

I solved the previous problem, but many errors were received, such as bellow:

CMakeFiles/rtkData.dir/build.make:458: recipe for target 'ExternalData/testing/Data/Baseline/Laplacian/Laplacian.mha' failed
make[2]: *** [ExternalData/testing/Data/Baseline/Laplacian/Laplacian.mha] Error 1
make[2]: *** Waiting for unfinished jobs....
CMakeFiles/rtkData.dir/build.make:199: recipe for target 'ExternalData/testing/Data/Baseline/Varian/attenuationProBeam.mha' failed
make[2]: *** [ExternalData/testing/Data/Baseline/Varian/attenuationProBeam.mha] Error 1
CMakeFiles/Makefile2:419: recipe for target 'CMakeFiles/rtkData.dir/all' failed
make[1]: *** [CMakeFiles/rtkData.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 21%] Linking C static library ../../bin/liblpsolve55.a
[ 21%] Built target lpsolve55
[ 21%] Linking CXX executable ../../bin/gengetopt
[ 21%] Built target gengetopt
Makefile:140: recipe for target 'all' failed
make: *** [all] Error 2
./auto_build_RTK.sh: line 51: ./HelloWorld: No such file or directory

How I can fix them?

Thanks

[TrevorHoyte]

There is a mistake in the script on lines 16 and 34 ,There is no need for the 'ITK' in the ../ITK. similarly for RTK
Here is the revised script give it a try hopefully it works for you .
################################################################################
#!/bin/bash

Check if some of the requirements are satisfied

command -v gcc >/dev/null 2>&1 || { echo >&2 "C/C++ compiler is not installed. Aborting."; exit 1; }
command -v cmake >/dev/null 2>&1 || { echo >&2 "Cmake is not installed. Aborting."; exit 1; }
command -v git >/dev/null 2>&1 || { echo >&2 "Git is not installed. Aborting."; exit 1; }

if [ ! -d "./ITK" ]; then
git clone http://itk.org/ITK.git
fi

if [ ! -d "./ITK-bin" ]; then
mkdir ITK-bin
cd ITK-bin
cmake -DModule_ITKReview=ON -DITK_USE_FFTWD=ON -DITK_USE_FFTWF=ON -DBUILD_DOCUMENTATION=OFF -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF
-DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC ../
make -j
cd ..
fi

if [ ! -d "./RTK" ]; then
git clone http://github.com/SimonRit/RTK.git
fi

if [ ! -d "./RTK-bin" ]; then
# Getting the full path of ITK-bin
cd ITK-bin
path_of_ITK=$(pwd)
cd ..

# Compile RTK
mkdir RTK-bin
cd RTK-bin
cmake -DITK_DIR=$path_of_ITK -DCMAKE_BUILD_TYPE=Release -DBUILD_EXAMPLES=ON -DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC ../
make -j
cd bin
./HelloWorld
cd ..
cd ..

fi