quarto_gh_pages.yml

on:
  push:
    branches: [ main ]
  pull_request:
    types:
      - opened
      - reopened
      - synchronize
      - closed

name: Render and deploy to Netlify and VirusBank

jobs:
  build-deploy:
    runs-on: ubuntu-latest

    env:
      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
      NETLIFY_SITE_ID: 284ddce0-61dd-40b7-ab79-8b5ac77ed457

    steps:
      - uses: actions/checkout@v3

      - name: Assemble alpha/toolbox.json 
        uses: mikefarah/yq@master
        with:
          cmd: yq -M -o=json src/toolbox.yaml > toolbox/toolbox.json

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: "4.2"
          use-public-rspm: true

      - name: Install rmarkdown
        run: |
          Rscript -e 'install.packages("rmarkdown")'

      - name: Install Quarto
        uses: quarto-dev/quarto-actions/setup@v2
        with:
          tinytex: true

      - name: Render Quarto Project
        uses: quarto-dev/quarto-actions/render@v2
        with:
          to: html
  
      - name: Deploy to Netlify 🚀
        uses: data-intuitive/netlify-deploy-site@v1
        if: github.event_name != 'pull_request'
        with:
          auth: ${{ secrets.NETLIFY_AUTH_TOKEN }}
          site: ${{ env.NETLIFY_SITE_ID }}
          dir: '_site'
          prod: true
          message: 'Deploy production ${{ github.ref }}'

      - name: Deploy preview
        id: deploy_preview
        if: github.event_name == 'pull_request'
        uses: data-intuitive/netlify-deploy-site@v1
        with:
          auth: ${{ secrets.NETLIFY_AUTH_TOKEN }}
          site: ${{ env.NETLIFY_SITE_ID }}
          dir: '_site'
          alias: "${{ env.BRANCH_NAME }}"
          message: 'Deploy production ${{ github.ref }}'

      - name: Deploy preview to VirusBank
        id: deploy_virusbank
        if: github.event_name == 'pull_request'
        uses: SamKirkland/FTP-Deploy-Action@v4.3.4
        with:
          server: ftp.virusbankplatformorg.webhosting.be
          username: floor@virusbankplatformorg
          password: ${{ secrets.FTP_AUTH_SECRET }}
          local-dir: './_site/'
          log-level: standard
          # dangerous-clean-slate: true

      - uses: thollander/actions-comment-pull-request@v2
        if: github.event_name == 'pull_request'
        with:
          message: |
            [![Deploy: success](https://img.shields.io/badge/Deploy-success-success)](${{ steps.deploy_preview.outputs.deploy-url }})
          comment_tag: deploy_status

      - uses: thollander/actions-comment-pull-request@v2
        if: github.event_name == 'pull_request' && failure()
        with:
          message: |
            [![Deploy: failure](https://img.shields.io/badge/Deploy-failure-critical)]${{ steps.deploy_preview.outputs.logs }})
          comment_tag: deploy_status