NAMESPACE

# Generated by roxygen2: do not edit by hand

export(any_na)
export(compute_prevalence)
export(condor_error_rates)
export(condor_filter_trim)
export(condor_generate_all)
export(condor_label_taxa)
export(condor_make_sequence_table)
export(condor_merge_pairs)
export(condor_remove_chimeras)
export(condor_sourcetracker)
export(create_file_structure)
export(dada2_param_copy_all)
export(dada2_param_filter_trim)
export(dada2_param_learn_error_rates)
export(dada2_param_merge_pairs)
export(dada2_param_remove_chimera)
export(get_param_chimeras)
export(get_param_error_rates)
export(get_param_filter_trim)
export(get_param_merge_pairs)
export(get_param_sourcetracker)
export(get_tax_ids)
export(parse_filtered_file)
export(plot_abundance_per_step)
export(plot_prevalence)
export(run_diversity_app)
export(save_files)
export(sourcetracker_parameters)
export(summarize_number_reads)
import(DECIPHER)
import(abind)
import(dada2)
import(dplyr)
import(furrr)
import(future)
import(ggplot2)
import(magrittr)
import(optparse)
import(readr)
import(shiny)
import(stringr)
importFrom(RCurl,getURL)
importFrom(forcats,fct_explicit_na)
importFrom(forcats,fct_relevel)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(stats,median)
importFrom(stringr,str_c)
importFrom(stringr,str_replace_all)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,gather)
importFrom(tidyr,unnest)