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SConscript
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SConscript
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import sys
import os
import libtbx.load_env
from libtbx.env_config import get_boost_library_with_python_version
from pathlib import Path
try:
# Check if we have a "modernized" pycbf
import pycbf
if pycbf.__version__.startswith("CBFlib"):
# Old pycbf
raise ImportError
build_cbf_bindings = False
except ImportError:
# We have to build CBFlib bindings ourselves
build_cbf_bindings = True
Import("env_etc")
env_etc.dxtbx_dist = libtbx.env.dist_path("dxtbx")
env_etc.dxtbx_include = os.path.join(env_etc.dxtbx_dist, "src")
env_etc.dxtbx_includes = []
env_etc.dxtbx_common_includes = [
env_etc.base_include,
env_etc.libtbx_include,
env_etc.scitbx_include,
env_etc.boost_adaptbx_include,
env_etc.boost_include,
env_etc.dxtbx_include,
]
Import("env_no_includes_boost_python_ext")
env = env_no_includes_boost_python_ext.Clone()
if libtbx.env.build_options.use_conda:
boost_python = get_boost_library_with_python_version(
"boost_python", env_etc.conda_libpath
)
env.Append(LIBPATH=env_etc.conda_libpath)
env_etc.dxtbx_common_includes.extend(env_etc.conda_cpppath)
else:
boost_python = "boost_python"
env_etc.dxtbx_libs = ["tiff", boost_python]
env_etc.dxtbx_lib_paths = [
env_etc.base_lib,
env_etc.libtbx_lib,
os.path.join(sys.prefix, "lib"),
]
env_etc.dxtbx_hdf5_libs = ["hdf5"]
env_etc.dxtbx_hdf5_lib_paths = []
if sys.platform == "win32" and env_etc.compiler == "win32_cl":
if libtbx.env.build_options.use_conda:
env_etc.dxtbx_hdf5_libs = ["hdf5"]
env_etc.cppdefines = {"H5_BUILT_AS_DYNAMIC_LIB": 1}
env_etc.dxtbx_hdf5_libs.append("zlib")
env_etc.dxtbx_includes.extend(env_etc.conda_cpppath)
env_etc.dxtbx_lib_paths.extend(env_etc.conda_libpath)
else:
env_etc.dxtbx_lib_paths = [
env_etc.libpath_python,
env_etc.libtbx_lib,
libtbx.env.under_base("libtiff"),
]
env_etc.dxtbx_hdf5_lib_paths = [
libtbx.env.under_base(os.path.join("HDF5-1.8.16", "lib"))
]
env_etc.dxtbx_includes.append(
libtbx.env.under_base(os.path.join("HDF5-1.8.16", "include"))
)
env_etc.dxtbx_includes.append(
os.path.join(env_etc.cctbx_include, "msvc9.0_include")
)
env_etc.dxtbx_includes.append(libtbx.env.under_base("libtiff"))
env_etc.dxtbx_libs = ["libtiff", "boost_python"]
if build_cbf_bindings:
env_etc.dxtbx_common_includes.extend(env_etc.cbflib_common_includes)
env_etc.dxtbx_libs.append("cbf")
# for the hdf5.h file - look at where Python is coming from unless is OS X
# framework build... messy but appears to work on Linux and OS X
include_root = os.path.split(env_etc.python_include)[0]
if "Python.framework" in include_root:
include_root = os.path.join(include_root.split("Python.framework")[0], "include")
if os.path.exists(os.path.join(include_root, "hdf5.h")):
env_etc.dxtbx_includes.append(include_root)
else:
# check for PSDM installation. Example:
# /reg/g/psdm/sw/external/hdf5/1.8.6/x86_64-rhel5-gcc41-opt/include
psdm_hdf5_path = os.path.join(
os.environ.get("SIT_ROOT", ""),
"sw",
"external",
"hdf5",
"1.8.6",
os.environ.get("SIT_ARCH", ""),
"include",
)
if os.path.exists(psdm_hdf5_path):
env_etc.dxtbx_common_includes.append(psdm_hdf5_path)
psdm_hdf5_path = os.path.join(
os.environ.get("SIT_ROOT", ""),
"sw",
"external",
"hdf5",
"1.8.6",
os.environ.get("SIT_ARCH", ""),
"lib",
)
if os.path.exists(psdm_hdf5_path):
env_etc.dxtbx_hdf5_lib_paths.append(psdm_hdf5_path)
if not env_etc.no_boost_python and hasattr(env_etc, "boost_adaptbx_include"):
Import("env_no_includes_boost_python_ext")
env = env_no_includes_boost_python_ext.Clone()
# Don't surface warnings from system or cctbx_project headers
system_includes = (
[x for x in env_etc.conda_cpppath if x]
if libtbx.env.build_options.use_conda
else []
)
system_includes.append(str(Path(env_etc.scitbx_dist).parent))
env.Append(CXXFLAGS=[f"-isystem{x}" for x in system_includes])
env.Append(SHCXXFLAGS=[f"-isystem{x}" for x in system_includes])
env_etc.enable_more_warnings(env=env)
env_etc.include_registry.append(
env=env,
paths=env_etc.dxtbx_includes
+ env_etc.dxtbx_common_includes
+ [env_etc.python_include],
)
env.Append(
LIBS=env_etc.libm + ["cctbx", "scitbx_boost_python"] + env_etc.dxtbx_libs,
LIBPATH=env_etc.dxtbx_lib_paths + env_etc.dxtbx_hdf5_lib_paths,
)
# Fix the build environment so that it doesn't break on modern C++
for path in list(env["CPPPATH"]):
if "msvc9.0_include" in path:
env["CPPPATH"].remove(path)
if env_etc.clang_version:
wd = ["-Wno-unused-function"]
env.Append(CCFLAGS=wd)
if build_cbf_bindings:
env.Append(CPPDEFINES="BUILD_CBF")
if hasattr(env_etc, "cppdefines"):
env.Append(CPPDEFINES=env_etc.cppdefines)
env.SharedLibrary(
target="#lib/dxtbx_ext",
source=[
"src/dxtbx/boost_python/ext.cpp",
"src/dxtbx/boost_python/compression.cc",
],
LIBS=env_etc.libs_python + env_etc.libm + env_etc.dxtbx_libs,
)
nexus = env.SharedLibrary(
target="#/lib/dxtbx_format_nexus_ext",
source=["src/dxtbx/format/boost_python/nexus_ext.cc"],
LIBS=env_etc.libs_python
+ env_etc.libm
+ env_etc.dxtbx_libs
+ env_etc.dxtbx_hdf5_libs,
)
imageset = env.SharedLibrary(
target="#/lib/dxtbx_imageset_ext",
source=["src/dxtbx/boost_python/imageset_ext.cc"],
LIBS=env_etc.libs_python
+ env_etc.libm
+ env_etc.dxtbx_libs
+ env_etc.dxtbx_hdf5_libs
+ env["LIBS"],
)
dxtbx_format_image_ext_sources = [
"src/dxtbx/format/boost_python/image_ext.cc",
]
if build_cbf_bindings:
dxtbx_format_image_ext_sources.append(
"src/dxtbx/format/boost_python/cbf_read_buffer.cpp"
)
image = env.SharedLibrary(
target="#/lib/dxtbx_format_image_ext",
source=dxtbx_format_image_ext_sources,
LIBS=env_etc.libs_python
+ env_etc.libm
+ env_etc.dxtbx_libs
+ env_etc.dxtbx_hdf5_libs,
)
model = env.SharedLibrary(
target="#/lib/dxtbx_model_ext",
source=[
"src/dxtbx/model/boost_python/beam.cc",
"src/dxtbx/model/boost_python/spectrum.cc",
"src/dxtbx/model/boost_python/goniometer.cc",
"src/dxtbx/model/boost_python/kappa_goniometer.cc",
"src/dxtbx/model/boost_python/multi_axis_goniometer.cc",
"src/dxtbx/model/boost_python/panel.cc",
"src/dxtbx/model/boost_python/detector.cc",
"src/dxtbx/model/boost_python/scan.cc",
"src/dxtbx/model/boost_python/scan_helpers.cc",
"src/dxtbx/model/boost_python/crystal.cc",
"src/dxtbx/model/boost_python/parallax_correction.cc",
"src/dxtbx/model/boost_python/pixel_to_millimeter.cc",
"src/dxtbx/model/boost_python/experiment.cc",
"src/dxtbx/model/boost_python/experiment_list.cc",
"src/dxtbx/model/boost_python/model_ext.cc",
],
LIBS=env_etc.libs_python + env_etc.libm + env_etc.dxtbx_libs + env["LIBS"],
)
flumpy_flags = []
# cl.exe treats symbols this way by default
if env_etc.compiler != "win32_cl":
flumpy_flags = ["-fvisibility=hidden"]
env.SharedLibrary(
target="#/lib/dxtbx_flumpy",
source=[
"src/dxtbx/boost_python/flumpy.cc",
],
LIBS=env_etc.libs_python + env_etc.libm + env_etc.dxtbx_libs + env["LIBS"],
CPPFLAGS=flumpy_flags,
)
env.SConscript("src/dxtbx/masking/SConscript", exports={"env": env})