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Is there a way to extract kmers from abundance-dist? #1894

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snafees opened this issue Sep 19, 2019 · 1 comment
Open

Is there a way to extract kmers from abundance-dist? #1894

snafees opened this issue Sep 19, 2019 · 1 comment

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@snafees
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snafees commented Sep 19, 2019

For example -

cat test_hist1.txt | head
abundance,count,cumulative,cumulative_fraction
2,1,1,0.0
4,2,3,0.001
5,2,5,0.002
6,3,8,0.004
9,1,9,0.004
10,4,13,0.006
11,1,14,0.007
12,2,16,0.008
14,3,19,0.009

Here's a sample output from the abundance-dist-singles.py script. Is there a way to extract these actual kmers?

@snafees
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snafees commented Sep 20, 2019

I know this has been asked before (I saw it after I posted this issue). [https://github.com//issues/1890]

Just wondering if there's been any progress on this. Any directions on manipulating the script files to accomplish this would be appreciated! Thanks so much.

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