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Help with error Ecotyper failed: Error in RunJobQueue() #97

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WJRDW opened this issue Jul 26, 2024 · 0 comments
Open

Help with error Ecotyper failed: Error in RunJobQueue() #97

WJRDW opened this issue Jul 26, 2024 · 0 comments

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@WJRDW
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WJRDW commented Jul 26, 2024

Dear EcoTyper team,

Thank you for the amazing tool!
I've been trying to perform de novo discovery of cell states and ecotypes in scRNA-seq data (tutorial 5), but keep encountering the same error and can not figure out its origin. Th error message doesn't really help trying to find the root of the issue.
Capture
At first I thought the size of my input matrix (16GB) might be the problem, but I'm running the analysis remotely on a HPC cluster so don't think the issue lies there. Would it be a possibility to provide you with my input matrix, annotation and configuration file to see if you are running into the same problem and the error is reproducible?
Thank you very much!

Best,
Wout

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