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Missing module in v2? #10

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bengisukb opened this issue Mar 2, 2023 · 0 comments
Open

Missing module in v2? #10

bengisukb opened this issue Mar 2, 2023 · 0 comments

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@bengisukb
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bengisukb commented Mar 2, 2023

Dear developers,

Firstly, I would like to thank you for improving the tool for duplicationsI am a user of the old version of eKLIPse (ekLIPse 1.8), and now I would like to analyze my illumina seqs with the new version of the tool that allows for to detection of duplications. However, I faced some struggles when I run the script. Here are the problems I had:

1- I received syntax error first in eKLIPse_init.py like that:
'range_oriH':[range(16081,16580), *range(1,408)],
^
SyntaxError: invalid syntax

(I solved it by removing *)

2- Then, I received ImportError message: No module named tabulate

(I solved it to copy past the old versions tabulate.py into the v2 folder)

3- Then, I received this error:

Traceback (most recent call last):
File "eKLIPse.py", line 7, in
from eKLIPse_init import *
File "/home/bengisu/Documents/Qt_eKLIPse_unix_v1-0/eKLIPse_v2-1/eKLIPse_init.py", line 10, in
from eKLIPse_circos import *
File "/home/bengisu/Documents/Qt_eKLIPse_unix_v1-0/eKLIPse_v2-1/eKLIPse_circos.py", line 1, in
import pdfkit
ImportError: No module named pdfkit

I installed the needed modules.

4- Then, I removed * from the script and finally it runs. However, in the alignment step I received

[ERROR] ReadThread "test1": cannot concatenate 'str' and 'list' objects (line 28)
error.

Having these problems make me think is there any missing script for the new version of eKLIPse.
Could you please help me with this issues?

Thank you for your help.

Best wishes,
Bengisu

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