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migrate-obs-tbsurveillance.ktr
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migrate-obs-tbsurveillance.ktr
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<?xml version="1.0" encoding="UTF-8"?>
<transformation>
<info>
<name>migrate-obs-tbsurveillance</name>
<description />
<extended_description />
<trans_version />
<trans_type>Normal</trans_type>
<directory>/</directory>
<parameters>
</parameters>
<log>
<trans-log-table>
<connection />
<schema />
<table />
<size_limit_lines />
<interval />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STATUS</id>
<enabled>Y</enabled>
<name>STATUS</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
<subject />
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
<subject />
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
<subject />
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
<subject />
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
<subject />
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
<subject />
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>STARTDATE</id>
<enabled>Y</enabled>
<name>STARTDATE</name>
</field>
<field>
<id>ENDDATE</id>
<enabled>Y</enabled>
<name>ENDDATE</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>DEPDATE</id>
<enabled>Y</enabled>
<name>DEPDATE</name>
</field>
<field>
<id>REPLAYDATE</id>
<enabled>Y</enabled>
<name>REPLAYDATE</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>Y</enabled>
<name>LOG_FIELD</name>
</field>
<field>
<id>EXECUTING_SERVER</id>
<enabled>N</enabled>
<name>EXECUTING_SERVER</name>
</field>
<field>
<id>EXECUTING_USER</id>
<enabled>N</enabled>
<name>EXECUTING_USER</name>
</field>
<field>
<id>CLIENT</id>
<enabled>N</enabled>
<name>CLIENT</name>
</field>
</trans-log-table>
<perf-log-table>
<connection />
<schema />
<table />
<interval />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>SEQ_NR</id>
<enabled>Y</enabled>
<name>SEQ_NR</name>
</field>
<field>
<id>LOGDATE</id>
<enabled>Y</enabled>
<name>LOGDATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>INPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>INPUT_BUFFER_ROWS</name>
</field>
<field>
<id>OUTPUT_BUFFER_ROWS</id>
<enabled>Y</enabled>
<name>OUTPUT_BUFFER_ROWS</name>
</field>
</perf-log-table>
<channel-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>LOGGING_OBJECT_TYPE</id>
<enabled>Y</enabled>
<name>LOGGING_OBJECT_TYPE</name>
</field>
<field>
<id>OBJECT_NAME</id>
<enabled>Y</enabled>
<name>OBJECT_NAME</name>
</field>
<field>
<id>OBJECT_COPY</id>
<enabled>Y</enabled>
<name>OBJECT_COPY</name>
</field>
<field>
<id>REPOSITORY_DIRECTORY</id>
<enabled>Y</enabled>
<name>REPOSITORY_DIRECTORY</name>
</field>
<field>
<id>FILENAME</id>
<enabled>Y</enabled>
<name>FILENAME</name>
</field>
<field>
<id>OBJECT_ID</id>
<enabled>Y</enabled>
<name>OBJECT_ID</name>
</field>
<field>
<id>OBJECT_REVISION</id>
<enabled>Y</enabled>
<name>OBJECT_REVISION</name>
</field>
<field>
<id>PARENT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>PARENT_CHANNEL_ID</name>
</field>
<field>
<id>ROOT_CHANNEL_ID</id>
<enabled>Y</enabled>
<name>ROOT_CHANNEL_ID</name>
</field>
</channel-log-table>
<step-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>TRANSNAME</id>
<enabled>Y</enabled>
<name>TRANSNAME</name>
</field>
<field>
<id>STEPNAME</id>
<enabled>Y</enabled>
<name>STEPNAME</name>
</field>
<field>
<id>STEP_COPY</id>
<enabled>Y</enabled>
<name>STEP_COPY</name>
</field>
<field>
<id>LINES_READ</id>
<enabled>Y</enabled>
<name>LINES_READ</name>
</field>
<field>
<id>LINES_WRITTEN</id>
<enabled>Y</enabled>
<name>LINES_WRITTEN</name>
</field>
<field>
<id>LINES_UPDATED</id>
<enabled>Y</enabled>
<name>LINES_UPDATED</name>
</field>
<field>
<id>LINES_INPUT</id>
<enabled>Y</enabled>
<name>LINES_INPUT</name>
</field>
<field>
<id>LINES_OUTPUT</id>
<enabled>Y</enabled>
<name>LINES_OUTPUT</name>
</field>
<field>
<id>LINES_REJECTED</id>
<enabled>Y</enabled>
<name>LINES_REJECTED</name>
</field>
<field>
<id>ERRORS</id>
<enabled>Y</enabled>
<name>ERRORS</name>
</field>
<field>
<id>LOG_FIELD</id>
<enabled>N</enabled>
<name>LOG_FIELD</name>
</field>
</step-log-table>
<metrics-log-table>
<connection />
<schema />
<table />
<timeout_days />
<field>
<id>ID_BATCH</id>
<enabled>Y</enabled>
<name>ID_BATCH</name>
</field>
<field>
<id>CHANNEL_ID</id>
<enabled>Y</enabled>
<name>CHANNEL_ID</name>
</field>
<field>
<id>LOG_DATE</id>
<enabled>Y</enabled>
<name>LOG_DATE</name>
</field>
<field>
<id>METRICS_DATE</id>
<enabled>Y</enabled>
<name>METRICS_DATE</name>
</field>
<field>
<id>METRICS_CODE</id>
<enabled>Y</enabled>
<name>METRICS_CODE</name>
</field>
<field>
<id>METRICS_DESCRIPTION</id>
<enabled>Y</enabled>
<name>METRICS_DESCRIPTION</name>
</field>
<field>
<id>METRICS_SUBJECT</id>
<enabled>Y</enabled>
<name>METRICS_SUBJECT</name>
</field>
<field>
<id>METRICS_TYPE</id>
<enabled>Y</enabled>
<name>METRICS_TYPE</name>
</field>
<field>
<id>METRICS_VALUE</id>
<enabled>Y</enabled>
<name>METRICS_VALUE</name>
</field>
</metrics-log-table>
</log>
<maxdate>
<connection />
<table />
<field />
<offset>0.0</offset>
<maxdiff>0.0</maxdiff>
</maxdate>
<size_rowset>10000</size_rowset>
<sleep_time_empty>50</sleep_time_empty>
<sleep_time_full>50</sleep_time_full>
<unique_connections>N</unique_connections>
<feedback_shown>Y</feedback_shown>
<feedback_size>50000</feedback_size>
<using_thread_priorities>Y</using_thread_priorities>
<shared_objects_file />
<capture_step_performance>N</capture_step_performance>
<step_performance_capturing_delay>1000</step_performance_capturing_delay>
<step_performance_capturing_size_limit>100</step_performance_capturing_size_limit>
<dependencies>
</dependencies>
<partitionschemas>
</partitionschemas>
<slaveservers>
</slaveservers>
<clusterschemas>
</clusterschemas>
<created_user>-</created_user>
<created_date>2019/09/23 20:15:50.867</created_date>
<modified_user>-</modified_user>
<modified_date>2019/09/23 20:15:50.867</modified_date>
<key_for_session_key>H4sIAAAAAAAAAAMAAAAAAAAAAAA=</key_for_session_key>
<is_key_private>N</is_key_private>
</info>
<notepads>
</notepads>
<connection>
<name>Openmrs HTY</name>
<server>${ISANTE-PLUS-DB-HOST}</server>
<type>MYSQL</type>
<access>Native</access>
<database>${ISANTE-PLUS-DB-NAME}</database>
<port>${ISANTE-PLUS-DB-PORT}</port>
<username>${ISANTE-PLUS-DB-USER}</username>
<password>${ISANTE-PLUS-DB-PASSWORD}</password>
<servername />
<data_tablespace />
<index_tablespace />
<attributes>
<attribute>
<code>FORCE_IDENTIFIERS_TO_LOWERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>FORCE_IDENTIFIERS_TO_UPPERCASE</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>IS_CLUSTERED</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>PORT_NUMBER</code>
<attribute>${ISANTE-PLUS-DB-PORT}</attribute>
</attribute>
<attribute>
<code>PRESERVE_RESERVED_WORD_CASE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>QUOTE_ALL_FIELDS</code>
<attribute>N</attribute>
</attribute>
<attribute>
<code>STREAM_RESULTS</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_BOOLEAN_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>SUPPORTS_TIMESTAMP_DATA_TYPE</code>
<attribute>Y</attribute>
</attribute>
<attribute>
<code>USE_POOLING</code>
<attribute>N</attribute>
</attribute>
</attributes>
</connection>
<order>
<hop>
<from>Columns</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Last ETL Excution Date</from>
<to>Database Join Groups</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Person Id</from>
<to>Select values format</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Person Identifier</from>
<to>Fetch iSante Location</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch iSante Location</from>
<to>Fetch Person Id</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Join rows (cartesian product)</from>
<to>Fetch Last ETL Excution Date</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Load iSante ID Identifier Type</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Load iSanteLocation Location Attribute</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Select values format</from>
<to>Save on CSV</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>concepts</from>
<to>Join rows (cartesian product)</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Database Join Groups</from>
<to>Fetch date</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch date</from>
<to>Fetch Bacilloscopie</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Bacilloscopie</from>
<to>Map Answers</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Map Answers</from>
<to>Fetch Mois</to>
<enabled>Y</enabled>
</hop>
<hop>
<from>Fetch Mois</from>
<to>Fetch Person Identifier</to>
<enabled>Y</enabled>
</hop>
</order>
<step>
<name>Columns</name>
<type>DataGrid</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<fields>
<field>
<name>table_name</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>person_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>concept_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>encounter_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>order_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>obs_datetime_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>location_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>obs_group_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>accession_number_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_group_id_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_boolean_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_coded_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_drug_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_datetime_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_numeric_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_modifier_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>value_text_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>date_started_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>date_stopped_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>comments_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>creator_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>date_created_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>voided_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>voided_by_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>date_voided_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>void_reason_c</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_one</name>
<type>Integer</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_na</name>
<type>String</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
<field>
<name>default_zero</name>
<type>Integer</type>
<format />
<currency />
<decimal />
<group />
<length>-1</length>
<precision>-1</precision>
<set_empty_string>N</set_empty_string>
</field>
</fields>
<data>
<line>
<item>obs</item>
<item>person_id</item>
<item>concept_id</item>
<item>encounter_id</item>
<item>order_id</item>
<item>obs_datetime</item>
<item>location_id</item>
<item>obs_group_id</item>
<item>accession_number</item>
<item>value_group_id</item>
<item>value_boolean</item>
<item>value_coded</item>
<item>value_drug</item>
<item>value_datetime</item>
<item>value_numeric</item>
<item>value_modifier</item>
<item>value_text</item>
<item>date_started</item>
<item>date_stopped</item>
<item>comments</item>
<item>creator</item>
<item>date_created</item>
<item>voided</item>
<item>voided_by</item>
<item>date_voided</item>
<item>void_reason</item>
<item>1</item>
<item />
<item>0</item>
</line>
</data>
<attributes />
<cluster_schema />
<remotesteps>
<input>
</input>
<output>
</output>
</remotesteps>
<GUI>
<xloc>46</xloc>
<yloc>83</yloc>
<draw>Y</draw>
</GUI>
</step>
<step>
<name>Database Join Groups</name>
<type>DBJoin</type>
<description />
<distribute>Y</distribute>
<custom_distribution />
<copies>1</copies>
<partitioning>
<method>none</method>
<schema_name />
</partitioning>
<connection>Openmrs HTY</connection>
<rowlimit>0</rowlimit>
<sql>select encounter.encounter_id, obs.obs_datetime, obs.date_voided, obs.void_reason, obs.date_created, obs.voided, encounter.location_id, obs.person_id, obs.obs_id group_id from obs
join encounter on encounter.encounter_id = obs.encounter_id
join encounter_type on encounter_type.encounter_type_id = encounter.encounter_type
and encounter_type.uuid in ('12f4d7c3-e047-4455-a607-47a40fe32460', 'a5600919-4dde-4eb8-a45b-05c204af8284', '709610ff-5e39-4a47-9c27-a60e740b0944', 'fdb5b14f-555f-4282-b4c1-9286addf0aae', '5c312603-25c1-4dbe-be18-1a167eb85f97', '49592bec-dd22-4b6c-a97f-4dd2af6f2171')
join concept on concept.concept_id = obs.concept_id
where concept.uuid = ?
and encounter.voided = false
and (encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or encounter.date_created >= ?
or encounter.date_changed >= ?
or encounter.date_voided >= ?
or obs.date_voided >= ?
or obs.date_created >= ?)
</sql>
<outer_join>N</outer_join>
<replace_vars>N</replace_vars>
<parameter>
<field>
<name>concept_group</name>
<type>String</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>
<field>
<name>last_execution</name>
<type>Date</type>
</field>