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![Profile Image]({{ site.url }}/{{ site.picture }})

Trained as a biomedical engineer, computational biologist and doctor.

Working as a data scientist at Open Targets, where we use machine learning and software engineering to help find new drugs, taking advantage of human genetics and other biological data.

Expertise

  • Computational biology
  • machine learning
  • sequencing pipelines (16S, NGS)
  • human microbiome
  • medicine
  • immunology
  • drug development
  • software project management

![]({{ site.url }}/assets/images/workshape.png)

Computing stack

  • Python - ipython,scikit-learn, numpy, matplotlib, seaborne, pandas, lxml, NLTK, requests, sqlite3.
  • R - ML view: gbm, lasso, randomforest, etc.; ggplot2, knitr, shiny.
  • Web development - working knowledge of HTML/CSS/JS, D3, dc.js, crossfilter.
  • Strong experience with REST APIs.
  • Linux - Git, bash/zsh, sge/torque/pbs, CI(travis/wercker), vagrant, ansible.
  • Cloud - AWS, Google
  • Containers - docker, kubernetes, ECS
  • ETL - Luigi, Airflow
  • Backends - Elasticsearch, sqlite
  • Familiar with agile and test-driven development. CI/CD/DevOps

Contributor to open source projects: