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Python-Django--Oral_Microbiome_Browser

This is an extensive bioinformatics project that I completed for my graduate practicum. The final product is an interactive browser-based application that can search for/filter information on the oral microbiome of dental patient samples.

NOTE: The Python scripts used to parse and reformat the RDP Classifier, Clinical and Taxonomy data are located in the repo "Python--Bioinformatics" under the directory "PRACTICUM--Oral_Microbiome_Browser" (link: https://github.com/BryanChim/Python--Bioinformatics/tree/master/PRACTICUM--Oral_Microbiome_Browser)

If you have Python-Django installed on your system, you can try out this browser with the following steps:

  1. Clone this repository to your computer

  2. Open your command-line/shell and navigate to said repository on your computer

  3. Enter >python manage.py runserver

  4. Open your web browser of choice, and navigate to the URL: http://127.0.0.1:8000/

  5. Enjoy!

  • If you're unable or do not wish to run the application, you can view screenshots of the interface in the images "Django Pages.jpg" and "Django Pages2.jpg"

  • For a pictoral representation of the MySQL tables created in the Microbiome database, see the image "models and keys.jpg"

  • For an in-depth report on the background, planning and workflow of the project, please see: "Oral Microbiome Project Report.docx"