From basecalling to error correction (Fastq to Fasta) as input to wf-bacterial genome

[jibrantahir]

Ask away!

Hi
I want to ask that downstream from base calling we do error-correction using dorrado , the step which convert fastq to fasta. However in wf-bacterial workflow we directly use fastq. Which fastq is it - uncorrected. And can we use fasta as input.
Many thanks