Processed input data and model outputs stored in dated sub-folders.
| Folder | Purpose |
|---|---|
estimates/sgtf |
Posterior estimates, fit diagnostics, and model comparison metrics for models estimating the transmission advantage of Omicron vs non-Omicron using SGTF status in dated sub-folders. These estimates can be most easily accessed using the tooling provided in R/load-local-data.R. |
estimates/bias |
Posterior estimates, and fit diagnostic for models estimating the potential sampling bias for S-gene status in dated sub-folders. These estimates can be most easily accessed using the tooling provided in R/load-local-data.R/. |
| public` | SGTF and reported cases data by specimen date downloaded from public sources saved in dated files using scripts/update-regional-data.R. |