From 2111eb378f0d37dbbac083203d344787ed842dcd Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Famke=20Ba=CC=88uerle?= <famke.baeuerle@gmail.com>
Date: Wed, 15 May 2024 13:21:29 +0200
Subject: [PATCH] update tbi test and snap

---
 .../gatk4/applyvqsr/tests/main.nf.test        |  4 ++--
 .../gatk4/applyvqsr/tests/main.nf.test.snap   | 20 -------------------
 2 files changed, 2 insertions(+), 22 deletions(-)

diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
index 39a3d5aa347..c316480ef52 100644
--- a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
+++ b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
@@ -35,7 +35,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert snapshot(path(process.out.tbi[0][1]).linesGzip.size()).match("tbi") }
+                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
             )
         }
 
@@ -67,7 +67,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions_allelspecific") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert snapshot(path(process.out.tbi[0][1]).linesGzip.size()).match("tbi_allelspecific") }
+                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
             )
         }
 
diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
index d30983f8e56..a30c9eca173 100644
--- a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
+++ b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
@@ -1,14 +1,4 @@
 {
-    "tbi_allelspecific": {
-        "content": [
-            20
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
-        },
-        "timestamp": "2024-05-15T13:01:08.112484"
-    },
     "versions": {
         "content": [
             [
@@ -70,16 +60,6 @@
         },
         "timestamp": "2024-05-15T13:01:24.370421"
     },
-    "tbi": {
-        "content": [
-            28
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
-        },
-        "timestamp": "2024-05-15T13:00:49.378451"
-    },
     "versions_allelspecific": {
         "content": [
             [