From a8b5e5c0c623d2ab5e549607a46b6c161dccb10e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Famke=20Ba=CC=88uerle?= <famke.baeuerle@gmail.com>
Date: Wed, 15 May 2024 13:33:48 +0200
Subject: [PATCH] change to check for filename

---
 .../gatk4/applyvqsr/tests/main.nf.test        |  4 ++--
 .../gatk4/applyvqsr/tests/main.nf.test.snap   | 20 +++++++++++++++++++
 2 files changed, 22 insertions(+), 2 deletions(-)

diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
index c316480ef52..104eb7f01b4 100644
--- a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
+++ b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test
@@ -35,7 +35,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
+                { assert snapshot(file(process.out.tbi.get(0).get(1)).name).match() }
             )
         }
 
@@ -67,7 +67,7 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(process.out.versions).match("versions_allelspecific") },
                 { assert path(process.out.vcf.get(0).get(1)).linesGzip.contains("##fileformat=VCFv4.2") },
-                { assert path(process.out.tbi.get(0).get(1)).linesGzip.toString().contains("TBI")}
+                { assert snapshot(file(process.out.tbi.get(0).get(1)).name).match() }
             )
         }
 
diff --git a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
index a30c9eca173..ad2fe8be65a 100644
--- a/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
+++ b/modules/nf-core/gatk4/applyvqsr/tests/main.nf.test.snap
@@ -1,4 +1,24 @@
 {
+    "human - vcf": {
+        "content": [
+            "test.vcf.gz.tbi"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.0"
+        },
+        "timestamp": "2024-05-15T13:31:50.727658"
+    },
+    "human - vcf - allele-specific": {
+        "content": [
+            "test.vcf.gz.tbi"
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.0"
+        },
+        "timestamp": "2024-05-15T13:29:42.331816"
+    },
     "versions": {
         "content": [
             [