From 1b244c3e60a6e3f0d51d739db01ea12fbe1fc6ca Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 15:07:10 -0400
Subject: [PATCH 1/9] add more takeaways and separate by topic
---
pages/index.Rmd | 30 ++++++++++++++++++++----------
1 file changed, 20 insertions(+), 10 deletions(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 2b1d852..df76eb7 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -8,13 +8,26 @@ output:
### **Results Summary**
-- The majority of current users leverage AnVIL for ongoing projects. Potential users were evenly split between never having used the AnVIL (but have heard of it) and having used AnVIL at some point previously.
-- Most of the respondents have a PhD or are currently working on a PhD.
-- Many respondents do computational work.
-- Almost all respondents are affiliated with a research intensive institution.
-- PRIMED, GREGoR, and eMERGE were the most popular consortia affiliations. CCDG and GTEx are also represented.
-- *For current users*, the most common computational need was needing large amounts of storage.
-- Many users reported they were "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
+- [*Identity User Type*](https://hutchdatascience.org/AnVIL_Poll_2024/IdentifyTypeOfUsers.html)
+ - The majority of current users leverage AnVIL for ongoing projects. Potential users were evenly split between never having used the AnVIL (but have heard of it) and having used AnVIL at some point previously.
+- [*Demographics*](https://hutchdatascience.org/AnVIL_Poll_2024/Demographics.html)
+ - Most of the respondents have a PhD or are currently working on a PhD.
+ - Many respondents do computational work.
+ - Almost all respondents are affiliated with a research intensive institution.
+ - PRIMED, GREGoR, and eMERGE were the most popular consortia affiliations. CCDG and GTEx are also represented.
+- [*Experience*](https://hutchdatascience.org/AnVIL_Poll_2024/Experience.html)
+ - Overall, respondents report less comfort with containers or workflows than various programming languages and their IDEs.
+ - Many respondents reported being extremely experienced with human genomic data. Far fewer respondents reported being extremely experienced with human clinical or non-human genomic data.
+ - Of the survey provided choices, respondents reported accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
+- [*Awareness*](https://hutchdatascience.org/AnVIL_Poll_2024/Awareness.html)
+ - Most respondents are aware of AnVIL Demos, even if they haven't attended one.
+ - Most respondents are aware of the AnVIL Support Forum, even if they haven't used it.
+- [*Preferences*](https://hutchdatascience.org/AnVIL_Poll_2024/Preferences.html)
+ - All respondents rank having specific tools or datasets supported/available as a very important feature for using the AnVIL (and this feature is ranked the highest by *current users*); *Potential users* rate having a free version with limited compute or storage as the most important feature for their potential use of the AnVIL.
+ - All respondents prefer virtual training workshops over other training modalities
+- [*For current users*](https://hutchdatascience.org/AnVIL_Poll_2024/CurrentUserQs.html)
+ - *For current users*, the most common computational need was needing large amounts of storage.
+ - Many users reported they were "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
Click on each tab to learn more.
@@ -27,6 +40,3 @@ This user poll was conducted in Spring 2024, with the poll open for responses fr
```{r, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
ottrpal::include_slide("https://docs.google.com/presentation/d/1PANHDY3T9wpEX1GBYcqkdYMG0c20UeZPH2pwjHFcLik/edit#slide=id.g2dda935efac_0_0")
```
-
-
-
From 6e6a3ca8524f457dbf7c46067eed541d9ee6f25b Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 16:18:13 -0400
Subject: [PATCH 2/9] try rebuilding flowchart to see if it scales better
---
pages/index.Rmd | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index df76eb7..5a5db5d 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -18,7 +18,7 @@ output:
- [*Experience*](https://hutchdatascience.org/AnVIL_Poll_2024/Experience.html)
- Overall, respondents report less comfort with containers or workflows than various programming languages and their IDEs.
- Many respondents reported being extremely experienced with human genomic data. Far fewer respondents reported being extremely experienced with human clinical or non-human genomic data.
- - Of the survey provided choices, respondents reported accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
+ - Of the survey provided choices, respondents reported accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
- [*Awareness*](https://hutchdatascience.org/AnVIL_Poll_2024/Awareness.html)
- Most respondents are aware of AnVIL Demos, even if they haven't attended one.
- Most respondents are aware of the AnVIL Support Forum, even if they haven't used it.
@@ -38,5 +38,5 @@ Click on each tab to learn more.
This user poll was conducted in Spring 2024, with the poll open for responses from February 15th to March 25th. 52 total responses were received, two of which were determined to be duplicate users, leaving a total of **50 user responses** used in the analysis. The following graphic shows the arrangement of questions. The first question was used to separate users into "Current" and "Potential" users. Demographics, experience, awareness, and preference related questions were asked of all users.
```{r, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
-ottrpal::include_slide("https://docs.google.com/presentation/d/1PANHDY3T9wpEX1GBYcqkdYMG0c20UeZPH2pwjHFcLik/edit#slide=id.g2dda935efac_0_0")
+ottrpal::include_slide("https://docs.google.com/presentation/d/1PANHDY3T9wpEX1GBYcqkdYMG0c20UeZPH2pwjHFcLik/edit#slide=id.g272f622aea5_0_34")
```
From 5c2a99b9f9785506a849d52c2080a0066f6d5cc4 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 16:25:59 -0400
Subject: [PATCH 3/9] switch word
---
pages/index.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 5a5db5d..71b99bb 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -8,7 +8,7 @@ output:
### **Results Summary**
-- [*Identity User Type*](https://hutchdatascience.org/AnVIL_Poll_2024/IdentifyTypeOfUsers.html)
+- [*Identify User Type*](https://hutchdatascience.org/AnVIL_Poll_2024/IdentifyTypeOfUsers.html)
- The majority of current users leverage AnVIL for ongoing projects. Potential users were evenly split between never having used the AnVIL (but have heard of it) and having used AnVIL at some point previously.
- [*Demographics*](https://hutchdatascience.org/AnVIL_Poll_2024/Demographics.html)
- Most of the respondents have a PhD or are currently working on a PhD.
From 4bb411cd43565c8278b743b4f939d9e6304787a7 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 16:26:48 -0400
Subject: [PATCH 4/9] sync with upper tabs
---
pages/index.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 71b99bb..3fee2d5 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -25,7 +25,7 @@ output:
- [*Preferences*](https://hutchdatascience.org/AnVIL_Poll_2024/Preferences.html)
- All respondents rank having specific tools or datasets supported/available as a very important feature for using the AnVIL (and this feature is ranked the highest by *current users*); *Potential users* rate having a free version with limited compute or storage as the most important feature for their potential use of the AnVIL.
- All respondents prefer virtual training workshops over other training modalities
-- [*For current users*](https://hutchdatascience.org/AnVIL_Poll_2024/CurrentUserQs.html)
+- [*Current Users*](https://hutchdatascience.org/AnVIL_Poll_2024/CurrentUserQs.html)
- *For current users*, the most common computational need was needing large amounts of storage.
- Many users reported they were "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
From 8968f75369d20e33e9ea0da7fbe6bc22250f5663 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 16:42:05 -0400
Subject: [PATCH 5/9] try static svg
---
pages/index.Rmd | 5 ++++-
plots/AnVILPoll2024Flowchart.svg | 1 +
2 files changed, 5 insertions(+), 1 deletion(-)
create mode 100644 plots/AnVILPoll2024Flowchart.svg
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 3fee2d5..8bf9773 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -37,6 +37,9 @@ Click on each tab to learn more.
This user poll was conducted in Spring 2024, with the poll open for responses from February 15th to March 25th. 52 total responses were received, two of which were determined to be duplicate users, leaving a total of **50 user responses** used in the analysis. The following graphic shows the arrangement of questions. The first question was used to separate users into "Current" and "Potential" users. Demographics, experience, awareness, and preference related questions were asked of all users.
-```{r, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
+
+
+
+```{r, eval=FALSE, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
ottrpal::include_slide("https://docs.google.com/presentation/d/1PANHDY3T9wpEX1GBYcqkdYMG0c20UeZPH2pwjHFcLik/edit#slide=id.g272f622aea5_0_34")
```
diff --git a/plots/AnVILPoll2024Flowchart.svg b/plots/AnVILPoll2024Flowchart.svg
new file mode 100644
index 0000000..99dc46e
--- /dev/null
+++ b/plots/AnVILPoll2024Flowchart.svg
@@ -0,0 +1 @@
+
\ No newline at end of file
From d360cd0c1f9859951eba8e72cec9009e97c73fc5 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Tue, 4 Jun 2024 16:46:40 -0400
Subject: [PATCH 6/9] svg did not render
---
pages/index.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 8bf9773..82c4a97 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -37,7 +37,7 @@ Click on each tab to learn more.
This user poll was conducted in Spring 2024, with the poll open for responses from February 15th to March 25th. 52 total responses were received, two of which were determined to be duplicate users, leaving a total of **50 user responses** used in the analysis. The following graphic shows the arrangement of questions. The first question was used to separate users into "Current" and "Potential" users. Demographics, experience, awareness, and preference related questions were asked of all users.
-
+
```{r, eval=FALSE, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
From b7c0f03b5d2ee821ca5a465085a6a789279ca29f Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Wed, 5 Jun 2024 13:19:45 -0400
Subject: [PATCH 7/9] Update pages/index.Rmd
Co-authored-by: AM Hoffman
---
pages/index.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 82c4a97..5c44d86 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -17,7 +17,7 @@ output:
- PRIMED, GREGoR, and eMERGE were the most popular consortia affiliations. CCDG and GTEx are also represented.
- [*Experience*](https://hutchdatascience.org/AnVIL_Poll_2024/Experience.html)
- Overall, respondents report less comfort with containers or workflows than various programming languages and their IDEs.
- - Many respondents reported being extremely experienced with human genomic data. Far fewer respondents reported being extremely experienced with human clinical or non-human genomic data.
+ - Many respondents report being extremely experienced with human genomic data. Far fewer respondents report being extremely experienced with human clinical or non-human genomic data.
- Of the survey provided choices, respondents reported accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
- [*Awareness*](https://hutchdatascience.org/AnVIL_Poll_2024/Awareness.html)
- Most respondents are aware of AnVIL Demos, even if they haven't attended one.
From 030b8d4ad1bc65ad2440986e70e0ec1ddaccbb9d Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Wed, 5 Jun 2024 13:19:56 -0400
Subject: [PATCH 8/9] Update pages/index.Rmd
Co-authored-by: AM Hoffman
---
pages/index.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index 5c44d86..f435d66 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -24,7 +24,7 @@ output:
- Most respondents are aware of the AnVIL Support Forum, even if they haven't used it.
- [*Preferences*](https://hutchdatascience.org/AnVIL_Poll_2024/Preferences.html)
- All respondents rank having specific tools or datasets supported/available as a very important feature for using the AnVIL (and this feature is ranked the highest by *current users*); *Potential users* rate having a free version with limited compute or storage as the most important feature for their potential use of the AnVIL.
- - All respondents prefer virtual training workshops over other training modalities
+ - All respondents prefer virtual training workshops over other training modalities.
- [*Current Users*](https://hutchdatascience.org/AnVIL_Poll_2024/CurrentUserQs.html)
- *For current users*, the most common computational need was needing large amounts of storage.
- Many users reported they were "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
From 2fcccbe4d9f1ec6de5171e12d6f3d552ea0d6392 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Wed, 5 Jun 2024 13:24:24 -0400
Subject: [PATCH 9/9] remove unnecessary chunk and do a verb tense check
---
pages/index.Rmd | 15 +++++----------
1 file changed, 5 insertions(+), 10 deletions(-)
diff --git a/pages/index.Rmd b/pages/index.Rmd
index f435d66..936427f 100644
--- a/pages/index.Rmd
+++ b/pages/index.Rmd
@@ -9,16 +9,16 @@ output:
### **Results Summary**
- [*Identify User Type*](https://hutchdatascience.org/AnVIL_Poll_2024/IdentifyTypeOfUsers.html)
- - The majority of current users leverage AnVIL for ongoing projects. Potential users were evenly split between never having used the AnVIL (but have heard of it) and having used AnVIL at some point previously.
+ - The majority of current users leverage AnVIL for ongoing projects. Potential users are evenly split between never having used the AnVIL (but have heard of it) and having used AnVIL at some point previously.
- [*Demographics*](https://hutchdatascience.org/AnVIL_Poll_2024/Demographics.html)
- Most of the respondents have a PhD or are currently working on a PhD.
- Many respondents do computational work.
- Almost all respondents are affiliated with a research intensive institution.
- - PRIMED, GREGoR, and eMERGE were the most popular consortia affiliations. CCDG and GTEx are also represented.
+ - PRIMED, GREGoR, and eMERGE are the most popular consortia affiliations. CCDG and GTEx are also represented.
- [*Experience*](https://hutchdatascience.org/AnVIL_Poll_2024/Experience.html)
- Overall, respondents report less comfort with containers or workflows than various programming languages and their IDEs.
- Many respondents report being extremely experienced with human genomic data. Far fewer respondents report being extremely experienced with human clinical or non-human genomic data.
- - Of the survey provided choices, respondents reported accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
+ - Of the survey provided choices, respondents report accessing or having interest in accessing All of Us, UK Biobank, and GTEx the most over other controlled access datasets.
- [*Awareness*](https://hutchdatascience.org/AnVIL_Poll_2024/Awareness.html)
- Most respondents are aware of AnVIL Demos, even if they haven't attended one.
- Most respondents are aware of the AnVIL Support Forum, even if they haven't used it.
@@ -26,8 +26,8 @@ output:
- All respondents rank having specific tools or datasets supported/available as a very important feature for using the AnVIL (and this feature is ranked the highest by *current users*); *Potential users* rate having a free version with limited compute or storage as the most important feature for their potential use of the AnVIL.
- All respondents prefer virtual training workshops over other training modalities.
- [*Current Users*](https://hutchdatascience.org/AnVIL_Poll_2024/CurrentUserQs.html)
- - *For current users*, the most common computational need was needing large amounts of storage.
- - Many users reported they were "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
+ - *For current users*, the most common computational need is large amounts of storage.
+ - Many users report they are "extremely likely" to recommend AnVIL, but we'd like to follow up with users who chose differently.
Click on each tab to learn more.
@@ -38,8 +38,3 @@ Click on each tab to learn more.
This user poll was conducted in Spring 2024, with the poll open for responses from February 15th to March 25th. 52 total responses were received, two of which were determined to be duplicate users, leaving a total of **50 user responses** used in the analysis. The following graphic shows the arrangement of questions. The first question was used to separate users into "Current" and "Potential" users. Demographics, experience, awareness, and preference related questions were asked of all users.
-
-
-```{r, eval=FALSE, fig.align='center', fig.alt= "Example image", echo = FALSE, out.width="100%"}
-ottrpal::include_slide("https://docs.google.com/presentation/d/1PANHDY3T9wpEX1GBYcqkdYMG0c20UeZPH2pwjHFcLik/edit#slide=id.g272f622aea5_0_34")
-```