review the list of components to be included in the next release

[zhouji2013]

component name	included in 2.6	to be included	type
alignment	Y	?	analysis, visualizer
analysis	Y	Y	general support
annotations	Y	?	visualizer
anova	Y	?	analysis
aracne-java	Y	?	analysis
caarray	Y	?	visualizer
celprocessing	Y	?	visualizer
cerna	Y	?	visualizer
cgems		N
colormosaic	Y	?	visualizer
cupid	Y	?	visualizer
cytospace	Y	?	visualizer
demand	Y	?	analysis
discovery	Y	?	analysis, visualizer
evidenceintegration		N
example		N - but keep in code
filtering	Y	Y	general support
foldchange	Y	?	analysis, visualizer
geneontology2	Y	?	analysis, visualizer
genomespace	Y	?	visualize
genspace	Y	?	other
gpmodule_v_3_0	Y	?	analysis, visualizer
hierarchicalclustering	Y	?	analysis, visualizer
idea	Y	?	analysis, visualizer
interactions	Y	?	visualizer
jmol	Y	?	visualizer
lincs	Y	?	other
markus	Y	?	analysis, visualizer
masterregulator	Y	?	analysis, visualizer
matrixreduce	Y	?	analysis, visualizer
medusa		N
microarrays	Y	?	visualizer
mindy	Y	?	analysis, visualizer
netboost		N
normalization	Y	Y	general support
plots	Y	?	visualizer
poshistogram	Y	?	visualizer
promoter	Y	?	visualizer
pudge	Y	?	analysis, visualizer
sam	Y	?	analysis, visualizer
selectors	Y	Y	general support
sequenceretriever	Y	?	visualizer
sequences	Y	?	visualizer
skybase	Y	?	analysis
skybaseview	Y	?	visualizer
skyline	Y	?	analysis
skylineview	Y	?	visualizer
somclustering	Y	?	analysis, visualizer
ttest	Y	?	analysis
versioninfo	Y	Y	general support
viewers	Y	?	visualizer
viper	Y	?	analysis

A component directory can contain more than one actual components.

A 'type' column is added to the list, where 'general support' means that we must keep them as part of geworkbench platform although they are technically components.

[zhouji2013]

Support of outdated caGrid technology is cross multiple components and is a major burden for the codebase. We need to review whether it is still necessary or not.

[zhouji2013]

genspace is one of the components that has cross-components impact.

[zhouji2013]

The list of components and features to be dropped (being edited):

• caGrid
• genspace and related features, including remote work space
• cgem (not released)
• evidenceintegration (not released)
• medusa (not released)
• netboost (not released)