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README_short.md

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To install, please run

python3 install.py 

and follow the instructions

download deepnano blitz and guppy note the paths where they are installed

IMPORTANT! - install deepnano blitz into the environment cretaed in previous step, NOT into a new one

Next, please run the example (no need to change any files, the pipeline has run-time check implemented and will detect non-existing paths and ask you to provide them):


cd example

python -u ../python/main.py --config_dir $PWD/example_config/