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FMI TrackMate Addons

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These addons for TrackMate include:

  • Max Quality Spot Analyzer: adds a spot feature HAS_MAX_QUALITY_IN_FRAME that is 1 if the spot has the highest quality of all spots in this frame, 0 otherwise
  • Manual Features: these features are intended to be manipulated by scripts
    • Custom Integer Spot Feature
    • Custom Double Spot Feature
    • Custom Integer Track Feature
    • Custom Double Track Feature
  • Point-cloud registration tracker (old): a spot-linking algorithm based on the Descriptor-based registration plugin and the mpicbg library in Fiji (performing a global descriptor matching over all the spots of a pair of frames). This tracker might ignore too many outliers and therefore not detect some tracks.
  • Descriptor-based tracker: a spot-linking algorithm based on the point descriptors, i.e. for each spot, we compare the distances to its n nearest neighbors, and compute the descriptor distance between two spots by comparing those n distances for both spots.