From 3485bb164627873e98e2a7b83cb51641693cc092 Mon Sep 17 00:00:00 2001
From: Francisco Zorrilla <zorrilla@chalmers.se>
Date: Thu, 10 Jun 2021 11:09:00 +0100
Subject: [PATCH] bug: add --parallel flag to binReassemble (fix issue #55)

---
 Snakefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Snakefile b/Snakefile
index 85f2fb6..c823b70 100644
--- a/Snakefile
+++ b/Snakefile
@@ -957,7 +957,7 @@ rule binReassemble:
         cp -r {input.refinedBins}/metawrap_*_bins {input.R1} {input.R2} .
         
         echo "Running metaWRAP bin reassembly ... "
-        metaWRAP reassemble_bins -o $(basename {output}) \
+        metaWRAP reassemble_bins --parallel -o $(basename {output}) \
             -b metawrap_*_bins \
             -1 $(basename {input.R1}) \
             -2 $(basename {input.R2}) \