From 89d4e5c5002782b168ffcf8e337b0a2f5c5119bf Mon Sep 17 00:00:00 2001 From: "Alex H. Wagner, PhD" Date: Sat, 9 Nov 2024 22:38:30 -0500 Subject: [PATCH] draft solution to ga4gh/gks-metaschema#35 --- .../def/VariantPathogenicityStatement.rst | 18 ++++++------------ 1 file changed, 6 insertions(+), 12 deletions(-) diff --git a/schema/va-spec/acmg-2015/def/VariantPathogenicityStatement.rst b/schema/va-spec/acmg-2015/def/VariantPathogenicityStatement.rst index 49e4942..eb328f9 100644 --- a/schema/va-spec/acmg-2015/def/VariantPathogenicityStatement.rst +++ b/schema/va-spec/acmg-2015/def/VariantPathogenicityStatement.rst @@ -6,17 +6,11 @@ A Statement describing the role of a variant in causing an inherited condition. -**Information Model** +**Profile Conditions** +This class adds the following conditions to the :ref:`variant-pathogenicity-statement-profile`: -.. list-table:: - :class: clean-wrap - :header-rows: 1 - :align: left - :widths: auto - - * - Field - - Flags - - Type - - Limits - - Description +- `VariantPathogenicityStatement.classification` is additionally defined as + *The ACMG 2015 classification of the variant's pathogenicity*. + - `.classification.label` is constrained to values `pathogenic`, `likely pathogenic`, + `uncertain significance`, `likely benign`, and `benign`.