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RSE keys don't look very stable #260

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bgruening opened this issue Dec 10, 2024 · 1 comment
Open

RSE keys don't look very stable #260

bgruening opened this issue Dec 10, 2024 · 1 comment

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@bgruening
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The data that is exported to RSE "looks" a bit scary. See for example: https://github.com/research-software-ecosystem/content/blob/master/data/abricate/abricate.galaxy.json

Those data are meant to be parsed by scripts to do fancy stuff. However, if the keys change frequently over time, this can become cumbersome.

I guess the keys in this file do match 1:1 to column names? Would it be better to map column names to some more stable entities, so that you can change column names but don't change the export?

If not, can we maybe change the column names to no include () and such. E.g. convert "No._of_tool_users_(all_time)_(usegalaxy.org.au)": to "no_of_tool_users_all_time_usegalaxy.org.au":?
All lower case would also help :)

@paulzierep
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The Codex is still very WIP, we recently updated all column names: https://raw.githubusercontent.com/galaxyproject/galaxy_codex/refs/heads/main/communities/all/resources/tools.json
So now, they should be pretty stable. The export to RSE can include any kind of mapping to make it more stable / easier to parse.
I would propose to add a converter here: https://github.com/research-software-ecosystem/utils/blob/main/galaxytool-import/galaxytool-import.py
Maybe the student wants to do that ?

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