Recurled the custard

• Resolved a severe urllib vurnability
• Fixed an syntax error related to version management
• Fixed an error related to error imports
• Fixed an error related to importing config.ini

Curled the Custard

Structured Github interactivity

• Added pull request template
• Added issue template

Completely rewrote Readme to improve prove usability

• Better prereq section
• Written examples of CLI usage
• Rewrote examples of package usage

Major things

• Upload and download functions can now take custom Callback functions
• Using a credentials file is now the default interaction method in CLI + package. Individual info are called overrides
• Logs can now easily be dumped to file
• Test coverage is now up to 60%
• Renamed freeze.txt to requirements-dev.txt
• Added a very simple/useful connection test in tests/

Minute things

• Credentials file is now automatically gitignored
• Fixed a rare ProgressPercentage issue
• Renamed io class to preproc due to namespace class
• Fixed a config.ini issue related to installing the package
• Tests repo now has a duplicate credentials.json template
• Fixed a bug relating to importing freeze.txt

First package release

Package is now hosted via pip. See https://pypi.org/project/HCPInterface/

• Expanded setup
• Moved installation into toml, cfg and py parts
• ProgressPercentage no longer interferes with self-test
• Moved versioning to cfg

Panacea Providing a Prettier Polished Package

Bumped version to 2.0

Refactoring:

• Reworked templates for providing AWS credentials
• Refactored the code. Squished functions together, reorganised files
• Seperated HCI and non HCI dependent commands
• Restructed the CLI stack
• Unobfuscated the pretty variable

Improvements:

• Rewrote argparse into click support
• Rewrote structure into installable package
• Replaced print with global logging functions
• Wrote self-test for 61% code coverage
• CLI can now call up AWS by using a credentials file
• Check terminal size and modify text to not exceed it
• Added automatic connection test when creating HPC object
• Possible to upload folder structures containing fastq
• Crap queries (search,delete) will try to resolve situation anyway

Fresh stuff:

• Added license
• Added conda autoinstaller
• Wrote an attempt for TravisCI autobuild
• Added a couple of fastq file verification steps
• Added function to auto-generate pipeline tags of uploaded fastq
• Added versioning

The start of everything

Oldest acceptable rollback point