From 1d9a027bc274a475bd054f5f180c5ada3fe8a1f1 Mon Sep 17 00:00:00 2001
From: jonca79 <54137490+jonca79@users.noreply.github.com>
Date: Tue, 9 Apr 2024 11:20:38 +0200
Subject: [PATCH] feat: do not merge regions that are not identical

Some GATK CNV results are missing from the table as they where merged with CNVkit results. This will mitigate this.
---
 config/config.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/config/config.yaml b/config/config.yaml
index 8e4a7739..1c033346 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -316,6 +316,7 @@ svdb_merge:
       cnv_caller:
         - cnvkit
         - gatk
+  overlap: 1 #Just merge the two vcf-files without merging regions
   extra: "--pass_only" #Just merge the two vcf-files without merging regions
 
 svdb_query: