diff --git a/.tests/jenkins/test_input_VAL2022.tsv b/.tests/jenkins/test_input_VAL2022.tsv
index 470cdd2b..2fc3b220 100644
--- a/.tests/jenkins/test_input_VAL2022.tsv
+++ b/.tests/jenkins/test_input_VAL2022.tsv
@@ -22,8 +22,8 @@ results/dna/additional_files/qc/VAL2022_T.insert_size_metrics.txt	e0e354ef710a18
 results/dna/additional_files/qc/VAL2022_T.samtools-stats.txt	fcdedb544ce58edf94d76a0bc36171e3
 results/dna/additional_files/vcf/gatk_mutect2_VAL2022_T.vcf.gz	c7e1498a6df9f218b4ac3b32ffad1a84
 results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.vcf	1cb3c5f2d244f43e36d57a95e0dcafaa
-results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf	31826224febe5292348ce1c16a2d192c
-results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz	b0b51b75d9376413026601c5c9b29309
+results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf	0f7f935ad35f3ffb1d59db09fc1407a3
+results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz	d539a550debe1c111428e9035242c28b
 results/dna/additional_files/vcf/vardict_VAL2022_T.vcf.gz	330c1cde2dacf7cd5aa2f931c9dc15f2
 results/dna/cnv/VAL2022_T/VAL2022_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv	11768eafeb999c30d122ed72b0e85961
 results/dna/fusion/VAL2022_T.fuseq_wes.report.csv	ada3432e93dd1ff64f9254d8c83c91c5
@@ -31,6 +31,6 @@ results/dna/fusion/VAL2022_T.gene_fuse_report.tsv	bb9a3b185f953f4bb0290ad93283dc
 results/dna/hrd/VAL2022_T.pathology_purecn.scarhrd_cnvkit_score.txt	54ab3263a38fd8f38b78b5d5ec700a3c
 results/dna/msi/VAL2022_T.msisensor_pro.score.tsv	d60f0e5b61503d86c5a7ff82893609c1
 results/dna/qc/VAL2022_T.coverage_and_mutations.tsv	d78823415dd95a041c4015dca27dde44
-results/dna/tmb/VAL2022_T.TMB.txt	6a9f7afee72f069296e9268e567479cc
+results/dna/tmb/VAL2022_T.TMB.txt	630203bccc74adf3947b35438a893e7b
 results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	ba20747697a5415dd40e2f19cec19b1c
 results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	fc948ceb919093acd6aa8aca4f3012c4
diff --git a/.tests/jenkins/test_input_all.tsv b/.tests/jenkins/test_input_all.tsv
index 557b06b6..a9e9a70e 100644
--- a/.tests/jenkins/test_input_all.tsv
+++ b/.tests/jenkins/test_input_all.tsv
@@ -87,18 +87,18 @@ results/dna/additional_files/vcf/gatk_mutect2_HD827_T.vcf.gz	99088f8101927c2e6d2
 results/dna/additional_files/vcf/gatk_mutect2_HD832_T.vcf.gz	5d31eea2b62d5acfc17cdcdd4fbc1e2f
 results/dna/additional_files/vcf/gatk_mutect2_NA12878_T.vcf.gz	2bb3ba66ec6bc9bc8d6740f3b4dab3b4
 results/dna/additional_files/vcf/gatk_mutect2_VAL2022_T.vcf.gz	c7e1498a6df9f218b4ac3b32ffad1a84
-results/dna/additional_files/vcf/HD827_T.annotated.exon_only.filter.hard_filter.vcf	efc0749734141d599b14d1b86e26993c
-results/dna/additional_files/vcf/HD827_T.annotated.exon_only.filter.soft_filter.vcf	55151e20e0c6cad04e6c55e635c08912
-results/dna/additional_files/vcf/HD827_T.annotated.vcf.gz	a34ca8e4065dbf4cd4ee6efe86ce5a19
+results/dna/additional_files/vcf/HD827_T.annotated.exon_only.filter.hard_filter.vcf	7b806765909d5f9473c73eb3e322ae90
+results/dna/additional_files/vcf/HD827_T.annotated.exon_only.filter.soft_filter.vcf	cb83b5ece98693077010db754bf2ca04
+results/dna/additional_files/vcf/HD827_T.annotated.vcf.gz	f796fb4a42e20d6ce3c249826170c0e1
 results/dna/additional_files/vcf/HD832_T.annotated.exon_only.filter.hard_filter.vcf	28abf525563712c6c8755d6842f5f59c
-results/dna/additional_files/vcf/HD832_T.annotated.exon_only.filter.soft_filter.vcf	931ec8e2ff673e7bddc24d294f16584b
-results/dna/additional_files/vcf/HD832_T.annotated.vcf.gz	f61ae417b7520e59b9e4aaa3549e02bb
-results/dna/additional_files/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.vcf	ac54c72d7659e0047c11e15e996d76b3
-results/dna/additional_files/vcf/NA12878_T.annotated.exon_only.filter.soft_filter.vcf	ba127ec2f48470c57b5e64b4700d5eec
-results/dna/additional_files/vcf/NA12878_T.annotated.vcf.gz	11213eaf73ccb7ead8370ecb630baddb
+results/dna/additional_files/vcf/HD832_T.annotated.exon_only.filter.soft_filter.vcf	1ded59457be545896d374024b39c0cd0
+results/dna/additional_files/vcf/HD832_T.annotated.vcf.gz	919a2d85ed3a86169772c530ae0e4902
+results/dna/additional_files/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.vcf	abb4aad15483118c2c04b6b54ff21f5b
+results/dna/additional_files/vcf/NA12878_T.annotated.exon_only.filter.soft_filter.vcf	238e5a6dc8f59134a7a4e5132c3a393e
+results/dna/additional_files/vcf/NA12878_T.annotated.vcf.gz	a1f621cfbbb61723685ab7acd26bf25b
 results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.vcf	1cb3c5f2d244f43e36d57a95e0dcafaa
-results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf	31826224febe5292348ce1c16a2d192c
-results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz	b0b51b75d9376413026601c5c9b29309
+results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf	0f7f935ad35f3ffb1d59db09fc1407a3
+results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz	d539a550debe1c111428e9035242c28b
 results/dna/additional_files/vcf/vardict_HD827_T.vcf.gz	8654e74433b4550cd15e74838e2a9d12
 results/dna/additional_files/vcf/vardict_HD832_T.vcf.gz	e105f2145cd7ee18b0912f696ecc86bb
 results/dna/additional_files/vcf/vardict_NA12878_T.vcf.gz	d4b82ab064afe007f46af1da81027101
@@ -127,15 +127,15 @@ results/dna/qc/HD827_T.coverage_and_mutations.tsv	3d88970bdab56b2cad8299e299d950
 results/dna/qc/HD832_T.coverage_and_mutations.tsv	559222bf250fb8ecb8dc25cc9c0f5960
 results/dna/qc/NA12878_T.coverage_and_mutations.tsv	e86759ee208722f0e27d3e27682d46cb
 results/dna/qc/VAL2022_T.coverage_and_mutations.tsv	d78823415dd95a041c4015dca27dde44
-results/dna/tmb/HD827_T.TMB.txt	4e865a386ed04808fce809e8c8c1b383
-results/dna/tmb/HD832_T.TMB.txt	766f6c13ea71ee2604d64f3f4dc804e6
+results/dna/tmb/HD827_T.TMB.txt	daaee4de560681775bff827c15a8bc9b
+results/dna/tmb/HD832_T.TMB.txt	71ff435292edd8cc8613cceef2abab25
 results/dna/tmb/NA12878_T.TMB.txt	bda4caafa15a03bd9efb61dd83b073a7
-results/dna/tmb/VAL2022_T.TMB.txt	6a9f7afee72f069296e9268e567479cc
-results/dna/vcf/HD827_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	580efcf54901f1013bf1c3406679d8a3
-results/dna/vcf/HD827_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	e7b8092e95bb781c753ea6b3187dc106
+results/dna/tmb/VAL2022_T.TMB.txt	630203bccc74adf3947b35438a893e7b
+results/dna/vcf/HD827_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	d0afb01193e5806d935dbe0d3d3b7918
+results/dna/vcf/HD827_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	48f5b016b07dbb62454690fea532ad5d
 results/dna/vcf/HD832_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	57d25b05d0836bdb74081c5ef5288859
 results/dna/vcf/HD832_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	e7657d6abeafaa2784e81df47822f93f
-results/dna/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	260b398f3a1f91c4cdeb2f7bf67d1c07
-results/dna/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	71b3b416e523bec84cf46b455da9a409
+results/dna/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	9c160c300df2e96a3f6a04a6a08cd135
+results/dna/vcf/NA12878_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	83be1a5998e42c091baccb02fda98caa
 results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf	ba20747697a5415dd40e2f19cec19b1c
 results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf	fc948ceb919093acd6aa8aca4f3012c4