From 17fa73565aa5a2a39700b9d49ffb6ee57b145522 Mon Sep 17 00:00:00 2001 From: jonca79 Date: Fri, 27 Oct 2023 14:25:48 +0200 Subject: [PATCH 1/2] tests: updated md5 sums for new validation files --- .tests/jenkins/test_input_VAL2022.tsv | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.tests/jenkins/test_input_VAL2022.tsv b/.tests/jenkins/test_input_VAL2022.tsv index 470cdd2b..2fc3b220 100644 --- a/.tests/jenkins/test_input_VAL2022.tsv +++ b/.tests/jenkins/test_input_VAL2022.tsv @@ -22,8 +22,8 @@ results/dna/additional_files/qc/VAL2022_T.insert_size_metrics.txt e0e354ef710a18 results/dna/additional_files/qc/VAL2022_T.samtools-stats.txt fcdedb544ce58edf94d76a0bc36171e3 results/dna/additional_files/vcf/gatk_mutect2_VAL2022_T.vcf.gz c7e1498a6df9f218b4ac3b32ffad1a84 results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.vcf 1cb3c5f2d244f43e36d57a95e0dcafaa -results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf 31826224febe5292348ce1c16a2d192c -results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz b0b51b75d9376413026601c5c9b29309 +results/dna/additional_files/vcf/VAL2022_T.annotated.exon_only.filter.soft_filter.vcf 0f7f935ad35f3ffb1d59db09fc1407a3 +results/dna/additional_files/vcf/VAL2022_T.annotated.vcf.gz d539a550debe1c111428e9035242c28b results/dna/additional_files/vcf/vardict_VAL2022_T.vcf.gz 330c1cde2dacf7cd5aa2f931c9dc15f2 results/dna/cnv/VAL2022_T/VAL2022_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv 11768eafeb999c30d122ed72b0e85961 results/dna/fusion/VAL2022_T.fuseq_wes.report.csv ada3432e93dd1ff64f9254d8c83c91c5 @@ -31,6 +31,6 @@ results/dna/fusion/VAL2022_T.gene_fuse_report.tsv bb9a3b185f953f4bb0290ad93283dc results/dna/hrd/VAL2022_T.pathology_purecn.scarhrd_cnvkit_score.txt 54ab3263a38fd8f38b78b5d5ec700a3c results/dna/msi/VAL2022_T.msisensor_pro.score.tsv d60f0e5b61503d86c5a7ff82893609c1 results/dna/qc/VAL2022_T.coverage_and_mutations.tsv d78823415dd95a041c4015dca27dde44 -results/dna/tmb/VAL2022_T.TMB.txt 6a9f7afee72f069296e9268e567479cc +results/dna/tmb/VAL2022_T.TMB.txt 630203bccc74adf3947b35438a893e7b results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf ba20747697a5415dd40e2f19cec19b1c results/dna/vcf/VAL2022_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf fc948ceb919093acd6aa8aca4f3012c4 From fda0ac558227534f4249f3c855a7067dfb0a4490 Mon Sep 17 00:00:00 2001 From: jonca79 Date: Wed, 1 Nov 2023 10:55:49 +0100 Subject: [PATCH 2/2] test: update md5sums for ALL test --- .tests/jenkins/test_input_all.tsv | 34 +++++++++++++++---------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/.tests/jenkins/test_input_all.tsv b/.tests/jenkins/test_input_all.tsv index 557b06b6..a9e9a70e 100644 --- a/.tests/jenkins/test_input_all.tsv +++ b/.tests/jenkins/test_input_all.tsv @@ -87,18 +87,18 @@ results/dna/additional_files/vcf/gatk_mutect2_HD827_T.vcf.gz 99088f8101927c2e6d2 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