diff --git a/config/config.data.hg19.yaml b/config/config.data.hg19.yaml index b5f2dabf..ed90cfde 100644 --- a/config/config.data.hg19.yaml +++ b/config/config.data.hg19.yaml @@ -119,7 +119,7 @@ hotspot_report: ENC: "{{PROJECT_DESIGN_DATA}}/GMS560/reports/ENC_hotspots_240919.csv" jumble_run: - normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/cnv/jumble/jumble.combined.filtered.50.PoN.hg19.RDS" + normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/PoN/jumble.combined.filtered.50.PoN.hg19.RDS" manta_config_t: extra: "--exome --callRegions {{PROJECT_DESIGN_DATA}}/GMS560/design/pool1_pool2.sort.merged.padded20.cnv200.hg19.split_fusion_genes.210608.bed.gz" diff --git a/config/config.data.hg38.yaml b/config/config.data.hg38.yaml index bf9c3ef4..d639a182 100644 --- a/config/config.data.hg38.yaml +++ b/config/config.data.hg38.yaml @@ -119,7 +119,7 @@ hotspot_report: ENC: "{{PROJECT_DESIGN_DATA}}/GMS560/reports/ENC_hotspots_240919_hg38.csv" # jumble_run: -# normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/cnv/jumble/jumble.combined.filtered.50.PoN.hg19.RDS" +# normal_reference: "{{PROJECT_DESIGN_DATA}}/GMS560/PoN/jumble.combined.filtered.50.PoN.hg19.RDS" manta_config_t: extra: "--exome --callRegions {{PROJECT_DESIGN_DATA}}/GMS560/design/pool1_pool2.sort.merged.padded20.cnv200.hg38.split_fusion_genes.reannotated.230222.bed.gz"