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mitoVGP_conda_env_pacbio.yml
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mitoVGP_conda_env_pacbio.yml
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name: mitoVGP_pacbio
channels:
- defaults
- bioconda/label/cf201901
- biobuilds
- yuxiang
- conda-forge
- bioconda
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.1.5=h516909a_1001
- avro-python2=1.9.0=py_0
- awscli=1.16.225=py27_0
- bam2fastq=1.1.0=0
- bcftools=1.9=ha228f0b_4
- blast=2.5.0=hc0b0e79_3
- boost=1.70.0=py27h9de70de_1
- boost-cpp=1.70.0=h8e57a91_2
- botocore=1.12.215=py_0
- bowtie2=2.3.4.1=py27h2d50403_1
- bzip2=1.0.8=h516909a_2
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.16.0=hfb77d84_1002
- certifi=2019.11.28=py27_0
- cffi=1.13.2=py27h8022711_0
- chardet=3.0.4=py27_1003
- colorama=0.3.9=py27_0
- cryptography=2.8=py27h72c5cf5_1
- curl=7.65.3=hf8cf82a_0
- cython=0.29.14=py27he1b5a44_0
- docutils=0.15.2=py27_0
- enum34=1.1.6=py27_1002
- fontconfig=2.13.1=h86ecdb6_1001
- freebayes=1.0.2=0
- freetype=2.10.0=he983fc9_1
- fribidi=1.0.5=h516909a_1002
- futures=3.3.0=py27_0
- genomicconsensus=2.3.3=py27_0
- gettext=0.19.8.1=hc5be6a0_1002
- giflib=5.1.7=h516909a_1
- glib=2.58.3=py27h6f030ca_1002
- graphite2=1.3.13=hf484d3e_1000
- h5py=2.10.0=nompi_py27h513d04c_100
- harfbuzz=2.4.0=h9f30f68_3
- hdf5=1.10.5=nompi_h3c11f04_1104
- htslib=1.9=ha228f0b_7
- icu=64.2=he1b5a44_1
- idna=2.8=py27_1000
- infernal=1.1.2=h14c3975_2
- ipaddress=1.0.23=py_0
- iso8601=0.1.12=py_1
- java-jdk=7.0.91=1
- jmespath=0.9.4=py_0
- jpeg=9c=h14c3975_1001
- krb5=1.16.3=h05b26f9_1001
- lcms2=2.9=hbd6801e_1
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libcurl=7.65.3=hda55be3_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.2.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_2
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- libopenblas=0.3.7=h5ec1e0e_5
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_0
- libtiff=4.1.0=hc3755c2_1
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.10=hee79883_0
- linecache2=1.0.0=py_1
- lz4-c=1.8.3=he1b5a44_1001
- minimap2=2.17=h8b12597_1
- mummer=3.23=pl526_8
- muscle=3.8.1551=h6bb024c_4
- ncurses=6.1=hf484d3e_1002
- numpy=1.16.6
- openjdk=11.0.1=h46a85a0_1017
- openssl=1.1.1d=h516909a_0
- pango=1.42.4=ha030887_1
- pbbam=0.23.0=h88345a9_0
- pbcommand=1.1.1=py_3
- pbcopper=0.4.2=h3f2a3d2_1
- pbcore=1.7.1=py27_0
- pbcoretools=0.2.4=py27_4
- pbgcpp=1.9.0=0
- pbmm2=1.0.0=ha888412_0
- pcre=8.43=he1b5a44_0
- perl=5.26.2=h516909a_1006
- picard=2.20.6=0
- pip=19.3.1=py27_0
- pixman=0.38.0=h516909a_1003
- pthread-stubs=0.4=h14c3975_1001
- pyasn1=0.4.8=py_0
- pycparser=2.19=py27_1
- pyopenssl=19.1.0=py27_0
- pysam=0.15.3=py27hda2845c_1
- pysocks=1.7.1=py27_0
- python=2.7.15=h5a48372_1009
- python-consensuscore=1.1.1=py27h3f2a3d2_3
- python-consensuscore2=3.4.1=py27_0
- python-dateutil=2.8.1=py_0
- pytz=2019.3=py_0
- pyyaml=5.2=py27h516909a_0
- r-base
- readline=8.0=hf8c457e_0
- requests=2.22.0=py27_1
- rsa=3.4.2=py_1
- s3transfer=0.2.1=py27_0
- samtools=1.9=h8571acd_11
- setuptools=42.0.2=py27_0
- six=1.13.0=py27_0
- sqlite=3.30.1=hcee41ef_0
- tbb=2019.9=hc9558a2_1
- tk=8.6.10=hed695b0_0
- traceback2=1.4.0=py27_0
- trnascan-se=2.0=pl526h470a237_1
- unittest2=1.1.0=py_0
- urllib3=1.25.7=py27_0
- wheel=0.33.6=py27_0
- xorg-fixesproto=5.0=h14c3975_1002
- xorg-inputproto=2.3.2=h14c3975_1002
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxfixes=5.0.3=h516909a_1004
- xorg-libxi=1.7.10=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxtst=1.2.3=h516909a_1002
- xorg-recordproto=1.14.2=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.2.2=h516909a_1
- zlib=1.2.11=h516909a_1006
- zstd=1.4.4=h3b9ef0a_1