From e1e63a23f98a974ec64478a2e4cdde997d656a62 Mon Sep 17 00:00:00 2001
From: Christoph Zwerschke <c.zwerschke@dkfz-heidelberg.de>
Date: Wed, 20 Mar 2024 16:11:12 +0000
Subject: [PATCH] Update docs and reformat

---
 README.md                         |  2 +-
 config_schema.json                |  1 +
 example_config.yaml               |  1 +
 scripts/script_utils/deps.py      | 11 ++++++-----
 scripts/script_utils/lock_deps.py |  1 +
 tests/conftest.py                 |  1 +
 6 files changed, 11 insertions(+), 6 deletions(-)

diff --git a/README.md b/README.md
index 8fdd84c..3f0546d 100644
--- a/README.md
+++ b/README.md
@@ -239,7 +239,7 @@ The service requires the following configuration parameters:
 
   - **Items** *(string)*
 
-- **`auth_check_claims`** *(object)*: A dict of all GHGA internal claims that shall be verified. Default: `{"name": null, "email": null, "iat": null, "exp": null}`.
+- **`auth_check_claims`** *(object)*: A dict of all GHGA internal claims that shall be verified. Default: `{"id": null, "name": null, "email": null, "iat": null, "exp": null}`.
 
 - **`auth_map_claims`** *(object)*: A mapping of claims to attributes in the GHGA auth context. Can contain additional properties. Default: `{}`.
 
diff --git a/config_schema.json b/config_schema.json
index 8619a8a..1755a8f 100644
--- a/config_schema.json
+++ b/config_schema.json
@@ -199,6 +199,7 @@
     },
     "auth_check_claims": {
       "default": {
+        "id": null,
         "name": null,
         "email": null,
         "iat": null,
diff --git a/example_config.yaml b/example_config.yaml
index fd8a1af..ef43a7b 100644
--- a/example_config.yaml
+++ b/example_config.yaml
@@ -5,6 +5,7 @@ auth_check_claims:
   email: null
   exp: null
   iat: null
+  id: null
   name: null
 auth_key: '{}'
 auth_map_claims: {}
diff --git a/scripts/script_utils/deps.py b/scripts/script_utils/deps.py
index 5d65cf7..cd84c93 100644
--- a/scripts/script_utils/deps.py
+++ b/scripts/script_utils/deps.py
@@ -14,6 +14,7 @@
 # limitations under the License.
 #
 """Contains utils for working with dependencies, lock files, etc."""
+
 from copy import deepcopy
 from pathlib import Path
 from typing import Any
@@ -55,11 +56,11 @@ def remove_self_dependencies(pyproject: dict) -> dict:
 
     if "optional-dependencies" in project_metadata:
         for group in project_metadata["optional-dependencies"]:
-            project_metadata["optional-dependencies"][
-                group
-            ] = exclude_from_dependency_list(
-                package_name=package_name,
-                dependencies=project_metadata["optional-dependencies"][group],
+            project_metadata["optional-dependencies"][group] = (
+                exclude_from_dependency_list(
+                    package_name=package_name,
+                    dependencies=project_metadata["optional-dependencies"][group],
+                )
             )
 
     return modified_pyproject
diff --git a/scripts/script_utils/lock_deps.py b/scripts/script_utils/lock_deps.py
index 60d857e..6dca822 100644
--- a/scripts/script_utils/lock_deps.py
+++ b/scripts/script_utils/lock_deps.py
@@ -14,6 +14,7 @@
 # limitations under the License.
 #
 """Provides a function to get all dependencies from the lock file"""
+
 import re
 from pathlib import Path
 from typing import Optional
diff --git a/tests/conftest.py b/tests/conftest.py
index 36a8147..61c3f72 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -15,6 +15,7 @@
 #
 
 """Shared fixtures"""
+
 import asyncio
 from time import sleep