Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Annotation as a Service #315

Open
Jessime opened this issue Jul 31, 2018 · 1 comment
Open

Annotation as a Service #315

Jessime opened this issue Jul 31, 2018 · 1 comment

Comments

@Jessime
Copy link
Contributor

Jessime commented Jul 31, 2018

One attractive way to speed up annotation is by creating a service which our pipeline can call to on a per-variant basis. See googlegenomics/variant-annotation#5 for more details about a potential architechure for this service.

If this service gets built, we should use it here instead of our current method of pre-processing VCF files.
@bashir2
Copy link
Member

bashir2 commented Oct 25, 2018

A prototype of this idea is implemented in PR #361.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Jessime @bashir2