Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use gcsfuse to deliver VEP cache #6

Open
Jessime opened this issue Jul 31, 2018 · 0 comments
Open

Use gcsfuse to deliver VEP cache #6

Jessime opened this issue Jul 31, 2018 · 0 comments

Comments

@Jessime
Copy link

Jessime commented Jul 31, 2018

We currently download the entire VEP cache of interest into every VM/instance, which takes a significant amount of time. When running smaller test sets, the downloading and unzipping likely accounts for most of the "annotation" time. gcsfuse might be able to alieviate this problem.

On the other hand, there may be some relative latency per variant, which could accumulate significantly on larger data sets. Performance testing would have to be done.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant