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[Feature]: Create an example NWB Zarr dataset #135

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rly opened this issue Oct 28, 2023 · 5 comments
Open
3 tasks done

[Feature]: Create an example NWB Zarr dataset #135

rly opened this issue Oct 28, 2023 · 5 comments
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category: enhancement improvements of code or code behavior priority: low alternative solution already working and/or relevant to only specific user(s)
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@rly
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rly commented Oct 28, 2023

What would you like to see added to HDMF-ZARR?

It would be nice to have a test NWB (or HDMF) Zarr dataset stored somewhere like our Google Drive, that users can download to explore its structure without having to run code.

Is your feature request related to a problem?

No response

What solution would you like?

^

Do you have any interest in helping implement the feature?

No.

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@oruebel
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oruebel commented Oct 28, 2023

We should make a DANDISET for this. I believe Cody already has an older example on DANDI. That is on my docket to look at as part of making streaming from S3 work with HDMF_ZARR as part of #134

@CodyCBakerPhD
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There is indeed an example file here: https://gui-staging.dandiarchive.org/dandiset/204919/draft/files?location=test_read_nwbfile&page=1

I believe it's just an ElectricalSeries and associated metadata, but that's something

Still seeking S3 streaming instructions that work with DANDI (the basic Zarr instructions encounter various issues)

@oruebel
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oruebel commented Oct 28, 2023

Still seeking S3 streaming instructions that work with DANDI (the basic Zarr instructions encounter various issues)

Sorry, I have not had a chance to work on this yet. I'll try to take a look next week.

@rly
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rly commented Oct 30, 2023

Thanks for sharing the example @CodyCBakerPhD! I forgot that that exists on DANDI staging.

@mavaylon1
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@rly can I close this?

@mavaylon1 mavaylon1 added category: enhancement improvements of code or code behavior priority: low alternative solution already working and/or relevant to only specific user(s) labels Apr 16, 2024
@mavaylon1 mavaylon1 added this to the Future milestone Apr 16, 2024
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