From c083037a14296b3fb9c89e6eb3e08e16b28c42df Mon Sep 17 00:00:00 2001 From: mavaylon1 Date: Thu, 16 May 2024 14:03:35 -0700 Subject: [PATCH] Fix warning --- .../expanded_example_dynamic_term_set.yaml | 2154 +++++++++++++---- docs/gallery/plot_term_set.py | 1 + .../schemasheets/nwb_static_enums.yaml | 58 +- src/hdmf/container.py | 12 +- 4 files changed, 1661 insertions(+), 564 deletions(-) diff --git a/docs/gallery/expanded_example_dynamic_term_set.yaml b/docs/gallery/expanded_example_dynamic_term_set.yaml index a2631696a..80b7b0d48 100644 --- a/docs/gallery/expanded_example_dynamic_term_set.yaml +++ b/docs/gallery/expanded_example_dynamic_term_set.yaml @@ -43,2031 +43,3143 @@ enums: permissible_values: CL:0000705: text: CL:0000705 - description: R6 photoreceptor cell meaning: CL:0000705 + title: R6 photoreceptor cell CL:4023108: text: CL:4023108 - description: oxytocin-secreting magnocellular cell + description: A magnocellular neurosecretory cell that is capable of producing + and secreting oxytocin. meaning: CL:4023108 + title: oxytocin-secreting magnocellular cell CL:0004240: text: CL:0004240 - description: WF1 amacrine cell + description: An amacrine cell with a wide dendritic field, dendrites in S1, + and post-synaptic terminals in S1. meaning: CL:0004240 + title: WF1 amacrine cell CL:0004242: text: CL:0004242 - description: WF3-1 amacrine cell + description: An amacrine cell with a wide dendritic field, dendrites in S3, + and post-synaptic terminals in S3. Dendrites of this cell type are straight + and minimally branched. meaning: CL:0004242 + title: WF3-1 amacrine cell CL:1000380: text: CL:1000380 - description: type 1 vestibular sensory cell of epithelium of macula of saccule - of membranous labyrinth + description: A type I vestibular sensory cell that is part of the epithelium + of macula of saccule of membranous labyrinth. meaning: CL:1000380 + title: type 1 vestibular sensory cell of epithelium of macula of saccule of + membranous labyrinth CL:4023128: text: CL:4023128 - description: rostral periventricular region of the third ventricle KNDy neuron + description: a KNDy neuron that is located in the rostral periventricular + region of the third ventricle. meaning: CL:4023128 + title: rostral periventricular region of the third ventricle KNDy neuron CL:0003020: text: CL:0003020 - description: retinal ganglion cell C outer + description: A retinal ganglion cell C that has post-synaptic terminals in + S2. meaning: CL:0003020 + title: retinal ganglion cell C outer CL:4023094: text: CL:4023094 - description: tufted pyramidal neuron + description: A pyramidal neuron which has a distinctive tuft formation, distal + from the soma. meaning: CL:4023094 + title: tufted pyramidal neuron CL:4023057: text: CL:4023057 - description: cerebellar inhibitory GABAergic interneuron meaning: CL:4023057 + title: cerebellar inhibitory GABAergic interneuron CL:2000049: text: CL:2000049 - description: primary motor cortex pyramidal cell + description: Any pyramidal cell that is part of a primary motor cortex. meaning: CL:2000049 + title: primary motor cortex pyramidal cell CL:0000119: text: CL:0000119 - description: cerebellar Golgi cell + description: Large intrinsic neuron located in the granule layer of the cerebellar + cortex that extends its dendrites into the molecular layer where they receive + contact from parallel fibers. The axon of the Golgi cell ramifies densely + in the granule layer and enters into a complex arrangement with mossy fiber + terminals and granule cell dendrites to form the cerebellar glomerulus. + Llinas, Walton and Lang. In The Synaptic Organization of the Brain. 5th + ed. 2004. meaning: CL:0000119 + title: cerebellar Golgi cell CL:0004227: text: CL:0004227 - description: flat bistratified amacrine cell + description: A bistratified amacrine cell with a small dendritic field. Flat + bistratified amacrine cells have post-synaptic terminals both on the border + of S1 and S2, and on the border of S3 and S4. meaning: CL:0004227 + title: flat bistratified amacrine cell CL:1000606: text: CL:1000606 - description: kidney nerve cell meaning: CL:1000606 + title: kidney nerve cell CL:1001582: text: CL:1001582 - description: lateral ventricle neuron + description: Neuron of lateral ventricle. meaning: CL:1001582 + title: lateral ventricle neuron CL:0000165: text: CL:0000165 - description: neuroendocrine cell + description: A neuron that is capable of some hormone secretion in response + to neuronal signals. meaning: CL:0000165 + title: neuroendocrine cell CL:0000555: text: CL:0000555 - description: neuronal brush cell meaning: CL:0000555 + title: neuronal brush cell CL:0004231: text: CL:0004231 - description: recurving diffuse amacrine cell + description: A broadly stratifying amacrine cell with a small dendritic field + and a complex dendritic arbor. Recurving diffuse amacrine cells have post-synaptic + terminals in S2, S3, and S4. meaning: CL:0004231 + title: recurving diffuse amacrine cell CL:0000687: text: CL:0000687 - description: R1 photoreceptor cell meaning: CL:0000687 + title: R1 photoreceptor cell CL:0001031: text: CL:0001031 - description: cerebellar granule cell + description: An excitatory granule cell with a soma located in the granular + layer of cerebellar cortex. A mature cerebellar granule cell has short dendrites + with a characteristic claw-like appearance and a long axon that ascends + to the molecular layer where it bifurcates (except in non-teleost fish, + where it does not bifurcate) and extends mediolaterally to form parallel + fibers. meaning: CL:0001031 + title: cerebellar granule cell CL:0003026: text: CL:0003026 - description: retinal ganglion cell D1 + description: A bistratified retinal ganglion cell that has a small dendrite + fields with a sparse dendrite arbor terminating in S2 and S3. meaning: CL:0003026 + title: retinal ganglion cell D1 CL:4033035: text: CL:4033035 - description: giant bipolar cell + description: An ON bipolar cell that has large dendritic and axonal fields. meaning: CL:4033035 + title: giant bipolar cell CL:4023009: text: CL:4023009 - description: extratelencephalic-projecting glutamatergic cortical neuron + description: A glutamatergic neuron located in the cerebral cortex that projects + to structures not derived from telencephalon. meaning: CL:4023009 + title: extratelencephalic-projecting glutamatergic cortical neuron CL:0010022: text: CL:0010022 - description: cardiac neuron + description: A neuron that has its soma in the heart. meaning: CL:0010022 + title: cardiac neuron CL:0000287: text: CL:0000287 - description: eye photoreceptor cell meaning: CL:0000287 + title: eye photoreceptor cell CL:0000488: text: CL:0000488 - description: visible light photoreceptor cell + description: A photoreceptor cell that detects visible light. meaning: CL:0000488 + title: visible light photoreceptor cell CL:0003046: text: CL:0003046 - description: M13 retinal ganglion cell + description: A bistratifed retinal ganglion cell that has small, symmetric + dendritic fields that terminate in S2 and S4. meaning: CL:0003046 + title: M13 retinal ganglion cell CL:4023169: text: CL:4023169 - description: trigeminal neuron + description: A neuron that is responsible for sensation in the face or motor + functions such as biting and chewing. Trigeminal neurons extend a single + axon shaft along the lateral white matter of the hindbrain and spinal cord. + The highly branched axons innervate the integument of the head. meaning: CL:4023169 + title: trigeminal neuron CL:0005007: text: CL:0005007 - description: Kolmer-Agduhr neuron + description: Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact + the central canal of the spinal cord and have ipsilateral ascending axons. meaning: CL:0005007 + title: Kolmer-Agduhr neuron CL:0005008: text: CL:0005008 - description: macular hair cell + description: An auditory hair cell located in the macula that is sensitive + to auditory stimuli. meaning: CL:0005008 + title: macular hair cell CL:4023027: text: CL:4023027 - description: L5 T-Martinotti sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron with a soma found in L5 + and possesses 'T-shaped' Martinotti morphologies with local axonal plexus + in L5a and translaminar axons restricted to the uppermost part of L1. They + show low-threshold spiking patterns with strong rebound firing, and inhibit + the L1 apical tuft of nearby pyramidal cells. meaning: CL:4023027 + title: L5 T-Martinotti sst GABAergic cortical interneuron (Mmus) CL:4033032: text: CL:4033032 - description: diffuse bipolar 6 cell + description: An ON diffuse bipolar cell that has a large dendritic field and + large axon terminals, which show little or no overlap. This cell predominantly + connects to narrow thorny ganglion cells. meaning: CL:4033032 + title: diffuse bipolar 6 cell CL:0008021: text: CL:0008021 - description: anterior lateral line ganglion neuron meaning: CL:0008021 + title: anterior lateral line ganglion neuron CL:4023028: text: CL:4023028 - description: L5 non-Martinotti sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron with a soma found in lower + L5 with mostly local axonal arborization but with some sparse ascending + axons. L5 non-Martinotti sst cells show somatic localization and local axon + plexus in L5b and L5b/6 and substantial innervation of L3 and L4, and receive + thalamic input from the ventral posteromedial nucleus and specifically target + L4 neurons, avoiding L5 pyramidal cells. L5 non-Martinotti sst cells tend + to show a higher input resistance and seem to be less stuttering. meaning: CL:4023028 + title: L5 non-Martinotti sst GABAergic cortical interneuron (Mmus) CL:4023063: text: CL:4023063 - description: medial ganglionic eminence derived interneuron + description: An interneuron that is derived from the medial ganglionic eminence. meaning: CL:4023063 + title: medial ganglionic eminence derived interneuron CL:4023032: text: CL:4023032 - description: ON retinal ganglion cell meaning: CL:4023032 + title: ON retinal ganglion cell CL:0003039: text: CL:0003039 - description: M8 retinal ganglion cell + description: A monostratified retinal ganglion cell with large soma and medium + dendritic field, with dense dendritic arbor. meaning: CL:0003039 + title: M8 retinal ganglion cell CL:0000757: text: CL:0000757 - description: type 5 cone bipolar cell (sensu Mus) + description: An ON-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the inner half of the inner + plexiform layer. The axon terminal is restricted to sublamina 3 of the inner + plexiform layer. It is narrowly stratified and branched. The dendritic tree + has many delicate branches. meaning: CL:0000757 + title: type 5 cone bipolar cell (sensu Mus) CL:0000609: text: CL:0000609 - description: vestibular hair cell + description: A mechanoreceptor located in the acoustic maculae and the semicircular + canals that mediates the sense of balance, movement, and head position. + The vestibular hair cells are connected to accessory structures in such + a way that movements of the head displace their stereocilia. This influences + the membrane potential of the cells which relay information about movements + via the vestibular part of the vestibulocochlear nerve to the brain stem. meaning: CL:0000609 + title: vestibular hair cell CL:0004219: text: CL:0004219 - description: A2 amacrine cell + description: A bistratifed retinal amacrine cell with a small dendritic field, + dendrite stratification in S1-S2, and a second dendrite stratification in + S5. meaning: CL:0004219 + title: A2 amacrine cell CL:4030028: text: CL:4030028 - description: glycinergic amacrine cell + description: An amacrine cell that uses glycine as a neurotransmitter. meaning: CL:4030028 + title: glycinergic amacrine cell CL:0002450: text: CL:0002450 - description: tether cell + description: A specialized hair cell that has an elongated kinocilium upon + which an otolith accretes. The tether cell then anchors the otolith in place. meaning: CL:0002450 + title: tether cell CL:0002374: text: CL:0002374 - description: ear hair cell + description: A hair cell of the ear that contains the organs of balance and + hearing. meaning: CL:0002374 + title: ear hair cell CL:0004124: text: CL:0004124 - description: retinal ganglion cell C1 + description: A retinal ganglion cell C inner that has medium dendritic diversity. meaning: CL:0004124 + title: retinal ganglion cell C1 CL:0004115: text: CL:0004115 - description: retinal ganglion cell B + description: A monostratified retinal ganglion cell with small to medium soma + and small to medium dendritic field. meaning: CL:0004115 + title: retinal ganglion cell B CL:1000384: text: CL:1000384 - description: type 2 vestibular sensory cell of epithelium of macula of saccule - of membranous labyrinth + description: A type II vestibular sensory cell that is part of the epithelium + of macula of saccule of membranous labyrinth. meaning: CL:1000384 + title: type 2 vestibular sensory cell of epithelium of macula of saccule of + membranous labyrinth CL:2000037: text: CL:2000037 - description: posterior lateral line neuromast hair cell + description: Any neuromast hair cell that is part of a posterior lateral line. meaning: CL:2000037 + title: posterior lateral line neuromast hair cell CL:0000673: text: CL:0000673 - description: Kenyon cell + description: An intrinsic neuron of the mushroom body of arthropods and annelids. + They have tightly packed, cytoplasm-poor cell bodies. meaning: CL:0000673 + title: Kenyon cell CL:4023052: text: CL:4023052 - description: Betz upper motor neuron + description: A Betz cell that synapses with lower motor neurons directly. meaning: CL:4023052 + title: Betz upper motor neuron CL:0004243: text: CL:0004243 - description: WF3-2 amacrine cell + description: An amacrine cell with a wild dendritic field, dendrites in S3, + and post-synaptic terminals in S3. Dendrites have spikes, cross over each + other, and cover a larger volume than dendrties of W3-1 retinal amacrine + cells. meaning: CL:0004243 + title: WF3-2 amacrine cell CL:1000222: text: CL:1000222 - description: stomach neuroendocrine cell meaning: CL:1000222 + title: stomach neuroendocrine cell CL:0002310: text: CL:0002310 - description: mammosomatotroph + description: An acidophil cell of the anterior pituitary gland that produces + both prolactin and growth hormone. meaning: CL:0002310 + title: mammosomatotroph CL:4023066: text: CL:4023066 - description: horizontal pyramidal neuron + description: A pyramidal neuron which has an apical tree which is oriented + parallel to the pia. This is unlike typical pyramidal neurons which have + its apical dendrite aligned vertically. meaning: CL:4023066 + title: horizontal pyramidal neuron CL:0000379: text: CL:0000379 - description: sensory processing neuron meaning: CL:0000379 + title: sensory processing neuron CL:0011006: text: CL:0011006 - description: Lugaro cell + description: An inhibitory GABAergic interneuron found in the cerebellar cortex. meaning: CL:0011006 + title: Lugaro cell CL:0004216: text: CL:0004216 - description: type 5b cone bipolar cell + description: A type 5 cone bipolar cell with diffuse axonal branches. meaning: CL:0004216 + title: type 5b cone bipolar cell CL:0004126: text: CL:0004126 - description: retinal ganglion cell C2 outer + description: A retinal ganglion cell C outer that has symmetrical and dense + dendritic dendritic tree with a large dendritic field. meaning: CL:0004126 + title: retinal ganglion cell C2 outer CL:0000108: text: CL:0000108 - description: cholinergic neuron + description: A neuron that uses acetylcholine as a vesicular neurotransmitter. meaning: CL:0000108 + title: cholinergic neuron CL:0011103: text: CL:0011103 - description: sympathetic neuron + description: Sympathetic neurons are part of the sympathetic nervous system + and are primarily adrenergic producing the neurotransmitter noradrenalin + along with other neuropeptides. meaning: CL:0011103 + title: sympathetic neuron CL:4023107: text: CL:4023107 - description: reticulospinal neuron + description: A neuron with soma location in the reticular formation with axons + that extend into the spinal cord such. Reticulospinal neuron activity can + lead to a variety of motor behaviors. meaning: CL:4023107 + title: reticulospinal neuron CL:4023002: text: CL:4023002 - description: dynamic beta motor neuron + description: A beta motor neuron that innervates the nuclear bag fibers of + muscle spindles. meaning: CL:4023002 + title: dynamic beta motor neuron CL:4030048: text: CL:4030048 - description: striosomal D1 medium spiny neuron + description: A DRD1-expressing medium spiny neuron that is part of a striosome + of dorsal striatum. meaning: CL:4030048 + title: striosomal D1 medium spiny neuron CL:4023163: text: CL:4023163 - description: spherical bushy cell + description: A bushy cell that receives only few large excitatory endbulb + synapses from auditory nerves. Spherical bush cells give excitatory input + to the lateral and medial parts of the superior olive. meaning: CL:4023163 + title: spherical bushy cell CL:4023061: text: CL:4023061 - description: hippocampal CA4 neuron + description: A neuron that has its soma located in CA4 of the hippocampus. meaning: CL:4023061 + title: hippocampal CA4 neuron CL:0000532: text: CL:0000532 - description: CAP motoneuron meaning: CL:0000532 + title: CAP motoneuron CL:0000526: text: CL:0000526 - description: afferent neuron + description: A neuron which conveys sensory information centrally from the + periphery. meaning: CL:0000526 + title: afferent neuron CL:0003003: text: CL:0003003 - description: G2 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a small dendritic + field and a sparse dendritic arbor with post sympatic terminals in sublaminar + layer S3. meaning: CL:0003003 + title: G2 retinal ganglion cell CL:0000530: text: CL:0000530 - description: primary neuron (sensu Teleostei) + description: A neuron that develops during the early segmentation stages in + teleosts, before the neural tube is formed. meaning: CL:0000530 + title: primary neuron (sensu Teleostei) CL:4023045: text: CL:4023045 - description: medulla-projecting glutamatergic neuron of the primary motor - cortex + description: An extratelencephalic-projecting glutamatergic neuron located + in layer 5b of the primary motor cortex that projects to the medulla. MY + ET cells are large, big-tufted cells with the apical dendrite often bifurcating + close to the soma, suggesting they are corticospinal cells. MY ET cells + have bigger hyperpolarization sag, lower input resistance, and smaller AP + width, compared to L5 IT neurons. meaning: CL:4023045 + title: medulla-projecting glutamatergic neuron of the primary motor cortex CL:3000004: text: CL:3000004 - description: peripheral sensory neuron + description: Peripheral sensory neuron. meaning: CL:3000004 + title: peripheral sensory neuron CL:0000544: text: CL:0000544 - description: slowly adapting mechanoreceptor cell meaning: CL:0000544 + title: slowly adapting mechanoreceptor cell CL:4030047: text: CL:4030047 - description: matrix D2 medium spiny neuron + description: A DRD2-expressing medium spiny neuron that is part of a matrix + compartment of dorsal striatum. meaning: CL:4030047 + title: matrix D2 medium spiny neuron CL:0004220: text: CL:0004220 - description: flag amacrine cell + description: An amacrine cell with a small, asymteric dendritic field. meaning: CL:0004220 + title: flag amacrine cell CL:4023125: text: CL:4023125 - description: KNDy neuron + description: A hypothalamus kisspeptin neuron that coexpresses kisspeptin, + neurokinin B and dynorphin. meaning: CL:4023125 + title: KNDy neuron CL:0004228: text: CL:0004228 - description: broad diffuse amacrine cell + description: An amacrine cell with a small dendritic field that has post-synaptic + terminals in S1, S2, S3, and S4. meaning: CL:0004228 + title: broad diffuse amacrine cell CL:4023122: text: CL:4023122 - description: oxytocin receptor sst GABAergic cortical interneuron + description: An interneuron located in the cerebral cortex that expresses + the oxytocin receptor. These interneurons also express somatostatin. meaning: CL:4023122 + title: oxytocin receptor sst GABAergic cortical interneuron CL:1000379: text: CL:1000379 - description: type 1 vestibular sensory cell of epithelium of macula of utricle - of membranous labyrinth + description: A type I vestibular sensory cell that is part of the epithelium + of macula of utricle of membranous labyrinth. meaning: CL:1000379 + title: type 1 vestibular sensory cell of epithelium of macula of utricle of + membranous labyrinth CL:0011111: text: CL:0011111 - description: gonadotropin-releasing hormone neuron + description: A neuroendocrine cell that secretes gonadotropin-releasing hormone + (GnRH). A GnRH neuron is born in the nasal placode during embryonic development + and migrates through the nose and forebrain to the hypothalamus. This cell + regulates reproduction by secreting GnRH into the pituitary portal vessels + to induce the release of gonadotropins into the general circulation. meaning: CL:0011111 + title: gonadotropin-releasing hormone neuron CL:0003042: text: CL:0003042 - description: M9-OFF retinal ganglion cell + description: An M9 retinal ganglion cell with synaptic terminals in S4 that + is depolarized by decreased illumination of their receptive field center meaning: CL:0003042 + title: M9-OFF retinal ganglion cell CL:0003030: text: CL:0003030 - description: M3 retinal ganglion cell + description: A monostratified retinal ganglion cell that has a medium soma + and a small dendrite field. meaning: CL:0003030 + title: M3 retinal ganglion cell CL:0003011: text: CL:0003011 - description: G8 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a large dendritic + field and a sparse dendritic arbor with post synaptic terminals in sublaminar + layer S4. meaning: CL:0003011 + title: G8 retinal ganglion cell CL:0000202: text: CL:0000202 - description: auditory hair cell + description: A mechanoreceptor cell of the auditory or vestibular system that + is sensitive to auditory stimuli. The accessory sensory structures are arranged + so that appropriate stimuli cause movement of the hair-like projections + (stereocilia and kinocilia) which relay the information centrally in the + nervous system. meaning: CL:0000202 + title: auditory hair cell CL:0002271: text: CL:0002271 - description: type EC1 enteroendocrine cell + description: A type EC enteredocrine cell in the intestines that stores and + secretes substance P and 5-hydroxytryptamine. meaning: CL:0002271 + title: type EC1 enteroendocrine cell CL:4023013: text: CL:4023013 - description: corticothalamic-projecting glutamatergic cortical neuron + description: A glutamatergic neuron located in the cerebral cortex that projects + to the thalamus. meaning: CL:4023013 + title: corticothalamic-projecting glutamatergic cortical neuron CL:4023114: text: CL:4023114 - description: calyx vestibular afferent neuron + description: A vestibular afferent neuron which posseses a unique postsynaptic + terminal, the calyx, which completely covers the basolateral walls of type + I hair cells and receives input from multiple ribbon synapses. meaning: CL:4023114 + title: calyx vestibular afferent neuron CL:0003045: text: CL:0003045 - description: M12 retinal ganglion cell + description: A bistratified ganglion cell with larger, asymetric dendritic + fields that terminate in S2 and S4. meaning: CL:0003045 + title: M12 retinal ganglion cell CL:0002487: text: CL:0002487 - description: cutaneous/subcutaneous mechanoreceptor cell + description: A neuronal receptor that respond to mechanical pressure or distortion + in the skin. meaning: CL:0002487 + title: cutaneous/subcutaneous mechanoreceptor cell CL:4030053: text: CL:4030053 - description: Island of Calleja granule cell + description: A DRD1-expressing, medium spiny neuron-like granule cell that + is part of an Island of Calleja. meaning: CL:4030053 + title: Island of Calleja granule cell CL:0000490: text: CL:0000490 - description: photopic photoreceptor cell meaning: CL:0000490 + title: photopic photoreceptor cell CL:2000023: text: CL:2000023 - description: spinal cord ventral column interneuron + description: Any interneuron that is part of a spinal cord ventral column. meaning: CL:2000023 + title: spinal cord ventral column interneuron CL:1000381: text: CL:1000381 - description: type 1 vestibular sensory cell of epithelium of crista of ampulla - of semicircular duct of membranous labyrinth + description: A type I vestibular sensory cell that is part of the epithelium + of crista of ampulla of semicircular duct of membranous labyrinth. meaning: CL:1000381 + title: type 1 vestibular sensory cell of epithelium of crista of ampulla of + semicircular duct of membranous labyrinth CL:0003013: text: CL:0003013 - description: G10 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a large dendritic + field, a medium dendritic arbor, and a long secondary dendrite shaft with + post synaptic terminals in sublaminar layer S4. meaning: CL:0003013 + title: G10 retinal ganglion cell CL:0000602: text: CL:0000602 - description: pressoreceptor cell + description: A receptor in the vascular system, particularly the aorta and + carotid sinus, which is sensitive to stretch of the vessel walls. meaning: CL:0000602 + title: pressoreceptor cell CL:4023039: text: CL:4023039 - description: amygdala excitatory neuron meaning: CL:4023039 + title: amygdala excitatory neuron CL:4030043: text: CL:4030043 - description: matrix D1 medium spiny neuron + description: A DRD1-expressing medium spiny neuron that is part of a matrix + compartment of dorsal striatum. meaning: CL:4030043 + title: matrix D1 medium spiny neuron CL:0000105: text: CL:0000105 - description: pseudounipolar neuron + description: Neuron with two neurites that are fused grossly when they protrude + from the soma and bifurcate a short distance from the soma. meaning: CL:0000105 + title: pseudounipolar neuron CL:0004137: text: CL:0004137 - description: retinal ganglion cell A2 inner + description: A retinal ganglion A2 cell with dendrites terminating in S4. meaning: CL:0004137 + title: retinal ganglion cell A2 inner CL:1001436: text: CL:1001436 - description: hair-tylotrich neuron + description: The subcutaneous mechanoreceptors that innervate tylotrich hair + follicles. meaning: CL:1001436 + title: hair-tylotrich neuron CL:1001503: text: CL:1001503 - description: olfactory bulb tufted cell + description: The principal glutaminergic neuron located in the outer third + of the external plexiform layer of the olfactory bulb; a single short primary + dendrite traverses the outer external plexiform layer and terminates within + an olfactory glomerulus in a tuft of branches, where it receives the input + from olfactory receptor neuron axon terminals; axons of the tufted cells + transfer information to a number of areas in the brain, including the piriform + cortex, entorhinal cortex, olfactory tubercle, and amygdala. meaning: CL:1001503 + title: olfactory bulb tufted cell CL:0000406: text: CL:0000406 - description: CNS short range interneuron meaning: CL:0000406 + title: CNS short range interneuron CL:2000087: text: CL:2000087 - description: dentate gyrus of hippocampal formation basket cell + description: Any basket cell that is part of a dentate gyrus of hippocampal + formation. meaning: CL:2000087 + title: dentate gyrus of hippocampal formation basket cell CL:0000534: text: CL:0000534 - description: primary interneuron (sensu Teleostei) + description: A primary neuron (sensu Teleostei) that is neither a sensory + neuron or a motor neuron. meaning: CL:0000534 + title: primary interneuron (sensu Teleostei) CL:0000246: text: CL:0000246 - description: Mauthner neuron meaning: CL:0000246 + title: Mauthner neuron CL:0003027: text: CL:0003027 - description: retinal ganglion cell D2 + description: A bistratified retinal ganglion cell D cell that has medium dendritic + arbor and a large dendritic field that terminates in S2 and S4. meaning: CL:0003027 + title: retinal ganglion cell D2 CL:0000752: text: CL:0000752 - description: cone retinal bipolar cell + description: A bipolar neuron found in the retina and having connections with + cone photoreceptor cells and neurons in the inner plexiform layer. meaning: CL:0000752 + title: cone retinal bipolar cell CL:0000410: text: CL:0000410 - description: CNS long range interneuron meaning: CL:0000410 + title: CNS long range interneuron CL:0009000: text: CL:0009000 - description: sensory neuron of spinal nerve + description: A sensory neuron of the spinal nerve that senses body position + and sends information about how much the muscle is stretched to the spinal + cord. meaning: CL:0009000 + title: sensory neuron of spinal nerve CL:0000754: text: CL:0000754 - description: type 2 cone bipolar cell (sensu Mus) + description: 'An OFF-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the outer half of the inner + plexiform layer. The dendritic tree is not well filled and the dendrites + are more delicate than in type 1 cells. The axon terminal is bushier and + exhibits a dense plexus of varicosities in the inner part of sublamina 1 + (Ghosh et al., 2004). It can be differentiated from other retinal bipolar + neurons by its expression of marker genes: Neto1, Lhx3 and Irx-6 (Shekhar, + 2016).' meaning: CL:0000754 + title: type 2 cone bipolar cell (sensu Mus) CL:0002309: text: CL:0002309 - description: corticotroph + description: A basophil chromphil cell of the anterior pitiutary gland that + produce adrenocorticotropic hormone, melanocyte-stimulating hormone and + lipotropin. This cell type is irregular in shape and has short dendritic + processes which are inserted among other neighboring cells; meaning: CL:0002309 + title: corticotroph CL:0010009: text: CL:0010009 - description: camera-type eye photoreceptor cell meaning: CL:0010009 + title: camera-type eye photoreceptor cell CL:4023069: text: CL:4023069 - description: medial ganglionic eminence derived GABAergic cortical interneuron + description: A GABAergic cortical interneuron that develops from the medial + ganglionic eminence and has migrated to the cerebral cortex. meaning: CL:4023069 + title: medial ganglionic eminence derived GABAergic cortical interneuron CL:0000102: text: CL:0000102 - description: polymodal neuron meaning: CL:0000102 + title: polymodal neuron CL:0000694: text: CL:0000694 - description: R3 photoreceptor cell meaning: CL:0000694 + title: R3 photoreceptor cell CL:0004183: text: CL:0004183 - description: retinal ganglion cell B3 + description: A monostratified retinal ganglion cell with medium soma, sparse + dendritic tree, and medium dendritic field. meaning: CL:0004183 + title: retinal ganglion cell B3 CL:0000693: text: CL:0000693 - description: neurogliaform cell + description: An interneuron that has spider-like appearance with a small round + soma, a large number (7-10) of short, smooth, or slightly beaded primary + dendrites that give rise to only a few secondary branches, and a branched + axon that establishes a dense axonal mesh with thin shafts. meaning: CL:0000693 + title: neurogliaform cell CL:0000760: text: CL:0000760 - description: type 8 cone bipolar cell (sensu Mus) + description: An ON-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the inner half of the inner + plexiform layer. This cell has the widest dendritic field and the widest + axon terminal of all retinal bipolar cells. The axon terminal is delicate + and stratified through sublaminae 4 and 5 of the inner plexiform layer. meaning: CL:0000760 + title: type 8 cone bipolar cell (sensu Mus) CL:4023001: text: CL:4023001 - description: static beta motor neuron + description: A beta motor neuron that innervates nuclear chain fibers. meaning: CL:4023001 + title: static beta motor neuron CL:1000424: text: CL:1000424 - description: chromaffin cell of paraaortic body + description: A chromaffin cell that is part of the paraaortic body. meaning: CL:1000424 + title: chromaffin cell of paraaortic body CL:0000120: text: CL:0000120 - description: granule cell + description: A neuron of the vertebrate central nervous system that is small + in size. This general class includes small neurons in the granular layer + of the cerebellar cortex, cerebral cortex neurons that are not pyramidal + cells and small neurons without axons found in the olfactory bulb. meaning: CL:0000120 + title: granule cell CL:0002312: text: CL:0002312 - description: somatotroph + description: An acidophilic cell of the anterior pituitary that produces growth + hormone, somatotropin. meaning: CL:0002312 + title: somatotroph CL:0000107: text: CL:0000107 - description: autonomic neuron + description: A neuron whose cell body is within an autonomic ganglion. meaning: CL:0000107 + title: autonomic neuron CL:2000047: text: CL:2000047 - description: brainstem motor neuron + description: Any motor neuron that is part of a brainstem. meaning: CL:2000047 + title: brainstem motor neuron CL:4023080: text: CL:4023080 - description: stellate L6 intratelencephalic projecting glutamatergic neuron - of the primary motor cortex (Mmus) + description: a L6 intratelencephalic projecting glutamatergic neuron of the + primary motor cortex that has stellate pyramidal morphology. meaning: CL:4023080 + title: stellate L6 intratelencephalic projecting glutamatergic neuron of the + primary motor cortex (Mmus) CL:0000848: text: CL:0000848 - description: microvillous olfactory receptor neuron + description: An olfactory receptor cell in which the apical ending of the + dendrite is a knob that bears numerous microvilli. meaning: CL:0000848 + title: microvillous olfactory receptor neuron CL:0004213: text: CL:0004213 - description: type 3a cone bipolar cell + description: A type of type 3 cone bipolar cell with distinctive curly dendrites. meaning: CL:0004213 + title: type 3a cone bipolar cell CL:0000116: text: CL:0000116 - description: pioneer neuron + description: Pioneer neurons establish a pathway in the developing central + nervous system and then undergo programmed cell death once the adult axons, + which follow them, have made connections with the target site. Thus, they + are a transient cell type involved in axon guidance. meaning: CL:0000116 + title: pioneer neuron CL:4023187: text: CL:4023187 - description: koniocellular cell + description: A neuron with a small cell body that is located in a koniocellular + layer of the lateral geniculate nucleus (LGN). meaning: CL:4023187 + title: koniocellular cell CL:4023116: text: CL:4023116 - description: type 2 spiral ganglion neuron + description: A spiral ganglion neuron that innervates outer hair cells. Type + 1 spiral ganglion neurons are unmyelinated and unipolar. meaning: CL:4023116 + title: type 2 spiral ganglion neuron CL:0008015: text: CL:0008015 - description: inhibitory motor neuron + description: A motor neuron that is capable of directly inhibiting muscle + contraction. meaning: CL:0008015 + title: inhibitory motor neuron CL:0003048: text: CL:0003048 - description: L cone cell + description: A cone cell that detects long wavelength light. Exact peak of + spectra detected differs between species. In humans, spectra peaks at 564-580 + nm. meaning: CL:0003048 + title: L cone cell CL:1000082: text: CL:1000082 - description: stretch receptor cell meaning: CL:1000082 + title: stretch receptor cell CL:0003031: text: CL:0003031 - description: M3-ON retinal ganglion cell + description: A monostratified retinal ganglion cell that has post synaptic + terminals in sublaminar layer S4 and is depolarized by illumination of its + receptive field center. meaning: CL:0003031 + title: M3-ON retinal ganglion cell CL:1001474: text: CL:1001474 - description: medium spiny neuron + description: An inhibitory, GABAergic projection neuron in the striatum that + integrates glutamatergic signals arising from the cerebral cortex and thalamus. meaning: CL:1001474 + title: medium spiny neuron CL:0000745: text: CL:0000745 - description: retina horizontal cell + description: A neuron that laterally connects other neurons in the inner nuclear + layer of the retina. meaning: CL:0000745 + title: retina horizontal cell CL:0002515: text: CL:0002515 - description: interrenal norepinephrine type cell + description: An interrenal chromaffin cell found in teleosts that contain + heterogeneous vesicles with electron-dense granules located asymmetrically + within the vesicular membrane. meaning: CL:0002515 + title: interrenal norepinephrine type cell CL:2000027: text: CL:2000027 - description: cerebellum basket cell + description: Any basket cell that is part of a cerebellum. meaning: CL:2000027 + title: cerebellum basket cell CL:0004225: text: CL:0004225 - description: spider amacrine cell + description: A broadly stratifying amacrine cell with a small dendritic field, + straight dendrites and post-synaptic terminals in S1, S2, and S3. meaning: CL:0004225 + title: spider amacrine cell CL:4023031: text: CL:4023031 - description: L4 sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron with a soma found in lower + L2/3 and upper 5, L4 Sst cells have Martinotti morphology with ascending + axons but denser local axons and sparser ‘fanning-out’ projections to L1. + L4 sst cells have smaller membrane time constant to calb2 (L2/3/5 fan Martinotti + Cell) and non-zero afterdepolarization (ADP). meaning: CL:4023031 + title: L4 sst GABAergic cortical interneuron (Mmus) CL:0008038: text: CL:0008038 - description: alpha motor neuron + description: A large, multipolar lower motor neuron of the brainstem and spinal + cord that innervates the extrafusal muscle fibers of skeletal muscle and + are directly responsible for initiating their contraction. While their cell + bodies are in the CNS (in the anterior gray horn of the spinal cord), they + are part of the somatic nervous system - a branch of the PNS. meaning: CL:0008038 + title: alpha motor neuron CL:4033030: text: CL:4033030 - description: diffuse bipolar 3b cell + description: An OFF calbindin-negative bipolar cell that has a large dendritic + field and stratifies narrowly close to the middle of the inner plexiform + layer. Its axon terminal is characterized by regularly branching and varicose + processes resembling beads on a string. Most of DB3b contacts with cones + are non-triad-associated. meaning: CL:4033030 + title: diffuse bipolar 3b cell CL:0000336: text: CL:0000336 - description: adrenal medulla chromaffin cell + description: A cell found within the adrenal medulla that secrete biogenic + amine hormones upon stimulation. meaning: CL:0000336 + title: adrenal medulla chromaffin cell CL:0000751: text: CL:0000751 - description: rod bipolar cell + description: A bipolar neuron found in the retina that is synapsed by rod + photoreceptor cells but not by cone photoreceptor cells. These neurons + depolarize in response to light. meaning: CL:0000751 + title: rod bipolar cell CL:0008037: text: CL:0008037 - description: gamma motor neuron + description: A lower motor neuron that innervates only intrafusal muscle fibers. + Unlike the alpha motor neurons, gamma motor neurons do not directly adjust + the lengthening or shortening of muscles but function in adjusting the sensitivity + of muscle spindles and in keeping muscle spindles taut, thereby allowing + the continued firing of alpha neurons. meaning: CL:0008037 + title: gamma motor neuron CL:0003028: text: CL:0003028 - description: M1 retinal ganglion cell + description: A monostratified retinal ganglion cell that has a small dendrite + field with a dense dendrite arbor with post synaptic terminals in sublaminer + layer S4. meaning: CL:0003028 + title: M1 retinal ganglion cell CL:0003016: text: CL:0003016 - description: G11-OFF retinal ganglion cell + description: A G11 retinal ganglion cell that has post synaptic terminals + in sublaminar layer S2 and is depolarized by decreased illumination of their + receptive field center meaning: CL:0003016 + title: G11-OFF retinal ganglion cell CL:0004239: text: CL:0004239 - description: wavy bistratified amacrine cell + description: A bistratified amacrine cell with a medium dendritic field and + post-synaptic terminals in S1-S2, and S4. meaning: CL:0004239 + title: wavy bistratified amacrine cell CL:4023168: text: CL:4023168 - description: somatosensory neuron + description: A neuron that is part of the somatic sensory system. Somatosensory + neurons innervate the skin or integument to detect different types of thermal, + chemical, and mechanical touch stimuli. meaning: CL:4023168 + title: somatosensory neuron CL:4023018: text: CL:4023018 - description: pvalb GABAergic cortical interneuron + description: A GABAergic interneuron located in the cerebral cortex that expresses + Parvalbumin. meaning: CL:4023018 + title: pvalb GABAergic cortical interneuron CL:0004138: text: CL:0004138 - description: retinal ganglion cell A2 + description: A retinal ganglion A cell with dense arbor near soma. meaning: CL:0004138 + title: retinal ganglion cell A2 CL:0000750: text: CL:0000750 - description: OFF-bipolar cell + description: A bipolar neuron found in the retina and having connections with + photoreceptors cells and neurons in the outer half of the inner plexiform + layer. These cells depolarize in response to light to dark transition. meaning: CL:0000750 + title: OFF-bipolar cell CL:0000709: text: CL:0000709 - description: R8 photoreceptor cell meaning: CL:0000709 + title: R8 photoreceptor cell CL:0004214: text: CL:0004214 - description: type 3b cone bipolar cell + description: A type of type 3 cone bipolar cell with distinctive crescent-shaped + dendrites. meaning: CL:0004214 + title: type 3b cone bipolar cell CL:0003047: text: CL:0003047 - description: M14 retinal ganglion cell + description: A bistratifed retinal ganglion cell that has small, symmetric + dendritic fields that terminate in S1 and S4-S5. meaning: CL:0003047 + title: M14 retinal ganglion cell CL:0015000: text: CL:0015000 - description: cranial motor neuron + description: Motor neuron that innervate muscles that control eye, jaw, and + facial movements of the vertebrate head and parasympathetic neurons that + innervate certain glands and organs. meaning: CL:0015000 + title: cranial motor neuron CL:0003036: text: CL:0003036 - description: M7 retinal ganglion cell + description: A monostratified retinal ganglion cell with large soma and large + dendritic field, with medium dendritic arbor, and has dendrites in layers + 2 and 5. meaning: CL:0003036 + title: M7 retinal ganglion cell CL:0000397: text: CL:0000397 - description: ganglion interneuron meaning: CL:0000397 + title: ganglion interneuron CL:1001509: text: CL:1001509 - description: glycinergic neuron + description: The neurons that utilize glycine as a neurotransmitter. meaning: CL:1001509 + title: glycinergic neuron CL:4023038: text: CL:4023038 - description: L6b glutamatergic cortical neuron + description: A glutamatergic neuron with a soma found in cortical layer 6b. + They are transcriptomically related to corticothalamic-projecting neurons + but have differential projections to the thalamus or anterior cingulate. meaning: CL:4023038 + title: L6b glutamatergic cortical neuron CL:0000112: text: CL:0000112 - description: columnar neuron meaning: CL:0000112 + title: columnar neuron CL:0002517: text: CL:0002517 - description: interrenal epinephrin secreting cell + description: An interrenal chromaffin cell found in teleosts that contain + small, homogeneous electron-lucent granules that are separated from the + vesicular membrane by a visible halo. meaning: CL:0002517 + title: interrenal epinephrin secreting cell CL:1000383: text: CL:1000383 - description: type 2 vestibular sensory cell of epithelium of macula of utricle - of membranous labyrinth + description: A type II vestibular sensory cell that is part of the epithelium + of macula of utricle of membranous labyrinth. meaning: CL:1000383 + title: type 2 vestibular sensory cell of epithelium of macula of utricle of + membranous labyrinth CL:0004116: text: CL:0004116 - description: retinal ganglion cell C + description: A retinal ganglion with cell medium cell bodies and medium to + large dendritic fields. meaning: CL:0004116 + title: retinal ganglion cell C CL:4023113: text: CL:4023113 - description: bouton vestibular afferent neuron + description: A vestibular afferent neuron that makes bouton synapses to type + II hair cells. meaning: CL:4023113 + title: bouton vestibular afferent neuron CL:0003034: text: CL:0003034 - description: M5 retinal ganglion cell + description: A monostratified retinal ganglion cell that has a small soma, + an assymetric dendritic field with post synaptic terminals in sublaminar + layer S3. meaning: CL:0003034 + title: M5 retinal ganglion cell CL:0011005: text: CL:0011005 - description: GABAergic interneuron + description: An interneuron that uses GABA as a vesicular neurotransmitter. These + interneurons are inhibitory meaning: CL:0011005 + title: GABAergic interneuron CL:0011105: text: CL:0011105 - description: dopamanergic interplexiform cell + description: A type of interneuron in the retinal inner nuclear layer which + carries information from the inner plexiform layer and the outer plexiform + layer, using dopamine. meaning: CL:0011105 + title: dopamanergic interplexiform cell CL:0000749: text: CL:0000749 - description: ON-bipolar cell + description: A bipolar neuron found in the retina and having connections with + photoreceptors cells and neurons in the inner half of the inner plexiform + layer. These cells depolarize in response to light stimulation of their + corresponding photoreceptors. meaning: CL:0000749 + title: ON-bipolar cell CL:0000498: text: CL:0000498 - description: inhibitory interneuron + description: An interneuron (also called relay neuron, association neuron + or local circuit neuron) is a multipolar neuron which connects afferent + neurons and efferent neurons in neural pathways. Like motor neurons, interneuron + cell bodies are always located in the central nervous system (CNS). meaning: CL:0000498 + title: inhibitory interneuron CL:4023071: text: CL:4023071 - description: L5/6 cck cortical GABAergic interneuron (Mmus) + description: A GABAergic cortical interneuron that expresses cck. L5/6 cck + cells have soma found mainly in L5 and L6 and have large axonal arborization. meaning: CL:4023071 + title: L5/6 cck cortical GABAergic interneuron (Mmus) CL:1000245: text: CL:1000245 - description: posterior lateral line ganglion neuron meaning: CL:1000245 + title: posterior lateral line ganglion neuron CL:0004139: text: CL:0004139 - description: retinal ganglion cell A2 outer + description: A retinal ganglion A2 cell with dendrites terminating in S2. meaning: CL:0004139 + title: retinal ganglion cell A2 outer CL:0000531: text: CL:0000531 - description: primary sensory neuron (sensu Teleostei) + description: A primary neuron (sensu Teleostei) that has a sensory function. meaning: CL:0000531 + title: primary sensory neuron (sensu Teleostei) CL:0004125: text: CL:0004125 - description: retinal ganglion cell C2 inner + description: A retinal ganglion cell C inner that has dense dendritic diversity. meaning: CL:0004125 + title: retinal ganglion cell C2 inner CL:4023064: text: CL:4023064 - description: caudal ganglionic eminence derived interneuron + description: An interneuron that is derived from the caudal ganglionic eminence. meaning: CL:4023064 + title: caudal ganglionic eminence derived interneuron CL:4030049: text: CL:4030049 - description: striosomal D2 medium spiny neuron + description: A DRD2-expressing medium spiny neuron that is part of a striosome + of dorsal striatum. meaning: CL:4030049 + title: striosomal D2 medium spiny neuron CL:0017002: text: CL:0017002 - description: prostate neuroendocrine cell + description: A neuroendocrine cell that is part of the prostate epithelium. meaning: CL:0017002 + title: prostate neuroendocrine cell CL:0000756: text: CL:0000756 - description: type 4 cone bipolar cell (sensu Mus) + description: An OFF-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the outer half of the inner + plexiform layer. The cell has a diffuse axon terminal with varicosities + in sublaminae 1 and 2 of the inner plexiform layer. meaning: CL:0000756 + title: type 4 cone bipolar cell (sensu Mus) CL:0000707: text: CL:0000707 - description: R7 photoreceptor cell meaning: CL:0000707 + title: R7 photoreceptor cell CL:0000700: text: CL:0000700 - description: dopaminergic neuron + description: A neuron that releases dopamine as a neurotransmitter. meaning: CL:0000700 + title: dopaminergic neuron CL:0003002: text: CL:0003002 - description: G1 retinal ganglion cell + description: A retinal ganglion cell that has a small dendritic field and + a medium dendritic arbor with post sympatic terminals in sublaminar layer + S3. meaning: CL:0003002 + title: G1 retinal ganglion cell CL:1000001: text: CL:1000001 - description: retrotrapezoid nucleus neuron meaning: CL:1000001 + title: retrotrapezoid nucleus neuron CL:4023007: text: CL:4023007 - description: L2/3 bipolar vip GABAergic cortical interneuron (Mmus) + description: A vip GABAergic cortical interneuron with bipolar morphology, + with a soma found in L2/3. L2/3 bipolar vip cells have extending axons across + all layers (with preferences for layers II/III and Va) and a dendritic tree + that is vertically more restricted than deeper layer vip cells and extend + fewer dendrites into the layers outside their home layer (location of soma). + L2/3 bipolar vip cells have great variability in firing patterns, though + most are continuous adapting. L2/3 bipolar vip cells are more depolarized + in their resting state, had less fast rectification, and had smaller after + hyperpolarization than deeper vip cells. meaning: CL:4023007 + title: L2/3 bipolar vip GABAergic cortical interneuron (Mmus) CL:0000528: text: CL:0000528 - description: nitrergic neuron + description: A nerve cell where transmission is mediated by nitric oxide. meaning: CL:0000528 + title: nitrergic neuron CL:0000639: text: CL:0000639 - description: basophil cell of pars distalis of adenohypophysis + description: A basophilic chromophil cell that of the anterior pituitary gland. meaning: CL:0000639 + title: basophil cell of pars distalis of adenohypophysis CL:0000849: text: CL:0000849 - description: crypt olfactory receptor neuron + description: An olfactory receptor cell with short cilia growing in an invagination + bordered by microvilli. meaning: CL:0000849 + title: crypt olfactory receptor neuron CL:0011110: text: CL:0011110 - description: histaminergic neuron + description: Neuron that secretes histamine. meaning: CL:0011110 + title: histaminergic neuron CL:0005025: text: CL:0005025 - description: visceromotor neuron + description: A motor neuron that synapses to parasympathetic neurons that + innervate tear glands, sweat glands, and the smooth muscles and glands of + the pulmonary, cardiovascular, and gastrointestinal systems. meaning: CL:0005025 + title: visceromotor neuron CL:0003001: text: CL:0003001 - description: bistratified retinal ganglion cell + description: A retinal ganglion cell that has dendrites stratified in two + layers of the inner-plexiform layer. meaning: CL:0003001 + title: bistratified retinal ganglion cell CL:0004241: text: CL:0004241 - description: WF2 amacrine cell + description: An amacrine cell with a wide dendritic field, dendrites in S2, + and post-synaptic terminals in S1. meaning: CL:0004241 + title: WF2 amacrine cell CL:4023019: text: CL:4023019 - description: L5/6 cck, vip cortical GABAergic interneuron (Mmus) + description: A vip GABAergic cortical interneuron that expresses cck. L5/6 + cck cells have soma found mainly in L5 and L6 and have large axonal arborization. meaning: CL:4023019 + title: L5/6 cck, vip cortical GABAergic interneuron (Mmus) CL:4023040: text: CL:4023040 - description: L2/3-6 intratelencephalic projecting glutamatergic cortical neuron + description: A intratelencephalic-projecting glutamatergic neuron with a soma + found in cortical layers L2/3-6 meaning: CL:4023040 + title: L2/3-6 intratelencephalic projecting glutamatergic cortical neuron CL:1001435: text: CL:1001435 - description: periglomerular cell + description: The small neuron in the glomerular layer of the olfactory bulb + whose dendrites arborize within a glomerulus, where it receives synaptic + input from olfactory receptor cell axon terminals, and also engages in dendrodendritic + interactions with mitral and tufted cell dendrites; uses both GABA and dopamine + as a neurotransmitter. meaning: CL:1001435 + title: periglomerular cell CL:4023127: text: CL:4023127 - description: arcuate nucleus of hypothalamus KNDy neuron + description: a KNDy neuron that is located in the arcuate nucleus of the hypothalamus. meaning: CL:4023127 + title: arcuate nucleus of hypothalamus KNDy neuron CL:0003007: text: CL:0003007 - description: G4-OFF retinal ganglion cell + description: A G4 retinal ganglion cell that has post sympatic terminals in + sublaminar layers S2 and S3 and is depolarized by decreased illumination + of their receptive field center meaning: CL:0003007 + title: G4-OFF retinal ganglion cell CL:0000101: text: CL:0000101 - description: sensory neuron + description: Any neuron having a sensory function; an afferent neuron conveying + sensory impulses. meaning: CL:0000101 + title: sensory neuron CL:2000097: text: CL:2000097 - description: midbrain dopaminergic neuron + description: Any dopaminergic neuron that is part of a midbrain. meaning: CL:2000097 + title: midbrain dopaminergic neuron CL:4023095: text: CL:4023095 - description: untufted pyramidal neuron + description: A pyramidal neuron which lacks a clear tuft formation but extends + to large radial distances. meaning: CL:4023095 + title: untufted pyramidal neuron CL:0003004: text: CL:0003004 - description: G3 retinal ganglion cell + description: A bistratified retinal ganglion cell that has a small dendritic + field with sparse density that terminates at the intersection of the S4-S5 + sublaminar level, and a second dendrite field that is medium in size and + degree of arborization that terminates in sublaminar layer S2. meaning: CL:0003004 + title: G3 retinal ganglion cell CL:0000527: text: CL:0000527 - description: efferent neuron + description: A neuron which sends impulses peripherally to activate muscles + or secretory cells. meaning: CL:0000527 + title: efferent neuron CL:1000382: text: CL:1000382 - description: type 2 vestibular sensory cell of stato-acoustic epithelium + description: A type II vestibular sensory cell that is part of the stato-acoustic + epithelium. meaning: CL:1000382 + title: type 2 vestibular sensory cell of stato-acoustic epithelium CL:4033019: text: CL:4033019 - description: ON-blue cone bipolar cell + description: An ON bipolar cell type with dendrites selectively contacting + S-cones. meaning: CL:4033019 + title: ON-blue cone bipolar cell CL:0000589: text: CL:0000589 - description: cochlear inner hair cell + description: A bulbous cell that is medially placed in one row in the organ + of Corti. In contrast to the outer hair cells, the inner hair cells are + fewer in number, have fewer sensory hairs, and are less differentiated. meaning: CL:0000589 + title: cochlear inner hair cell CL:4023160: text: CL:4023160 - description: cartwheel cell + description: A neuron of the dorsal cochlear nucleus with spiny dendrites + that receive input from the axons of granule cells and with axons that release + GABA and glycine onto cartwheel, pyramidal and giant cell targets. meaning: CL:4023160 + title: cartwheel cell CL:1001437: text: CL:1001437 - description: hair-down neuron + description: The subcutaneous mechanoreceptors that innervate vellus hairs. meaning: CL:1001437 + title: hair-down neuron CL:0011102: text: CL:0011102 - description: parasympathetic neuron + description: Parasympathetic neurons are part of the parasympathetic nervous + sysem and the cell bodies lie in the brain and sacral region of the spinal + cord. The neurons are mainly cholinergic. meaning: CL:0011102 + title: parasympathetic neuron CL:2000029: text: CL:2000029 - description: central nervous system neuron + description: Any neuron that is part of a central nervous system. meaning: CL:2000029 + title: central nervous system neuron CL:4023115: text: CL:4023115 - description: type 1 spiral ganglion neuron + description: A spiral ganglion neuron that innervates inner hair cells. Type + 1 spiral ganglion neurons are myelinated and bipolar. meaning: CL:4023115 + title: type 1 spiral ganglion neuron CL:0002311: text: CL:0002311 - description: mammotroph + description: An acidophilic cell of the anterior pituitary that produces prolactin. meaning: CL:0002311 + title: mammotroph CL:0003025: text: CL:0003025 - description: retinal ganglion cell C3 + description: A retinal ganglion cell C inner that has sparse dendritic density, + and large dendritic field. meaning: CL:0003025 + title: retinal ganglion cell C3 CL:4030050: text: CL:4030050 - description: D1/D2-hybrid medium spiny neuron + description: A medium spiny neuron that expresses both DRD1 and DRD2 and is + part of an extra-striosomal part of dorsal striatum. meaning: CL:4030050 + title: D1/D2-hybrid medium spiny neuron CL:4023118: text: CL:4023118 - description: L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic interneuron does not have Martinotti morphology + with a soma found in L5/6 of the cerebral cortex. meaning: CL:4023118 + title: L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus) CL:4023110: text: CL:4023110 - description: amygdala pyramidal neuron + description: A pyramidal neuron with soma located in the amygdala. meaning: CL:4023110 + title: amygdala pyramidal neuron CL:0002273: text: CL:0002273 - description: type ECL enteroendocrine cell + description: A type EC enteroendocrine cell type that is numerous in the fundus + of the stomach; stores 5-hydroxytryptamine and histamine. meaning: CL:0002273 + title: type ECL enteroendocrine cell CL:0003050: text: CL:0003050 - description: S cone cell + description: A cone cell that detects short wavelength light. Exact peak of + spectra detected differs between species. In humans, spectra peaks at 420-440 + nm. meaning: CL:0003050 + title: S cone cell CL:4023121: text: CL:4023121 - description: sst chodl GABAergic cortical interneuron + description: A sst GABAergic cortical interneuron that also expresses Chodl. + These neurons are rare and correspond to the only known cortical interneurons + with long-range projection. meaning: CL:4023121 + title: sst chodl GABAergic cortical interneuron CL:4023020: text: CL:4023020 - description: dynamic gamma motor neuron + description: A gamma motor neuron that innervates dynamic nuclear bag fibers + (bag1 fibers) and enhances the sensitivities of Ia sensory neurons. They + alter muscle spindle sensitivity and increases its discharge in response + to velocity of muscle length (rather than just magnitude). meaning: CL:4023020 + title: dynamic gamma motor neuron CL:0004246: text: CL:0004246 - description: monostratified cell + description: A central nervous system neuron that stratifies at one and only + one location. meaning: CL:0004246 + title: monostratified cell CL:0000495: text: CL:0000495 - description: blue sensitive photoreceptor cell + description: A photoreceptor cell that is sensitive to blue light. meaning: CL:0000495 + title: blue sensitive photoreceptor cell CL:0000029: text: CL:0000029 - description: neural crest derived neuron meaning: CL:0000029 + title: neural crest derived neuron CL:0004001: text: CL:0004001 - description: local interneuron + description: An interneuron whose axon stays entirely within the gray matter + region where the cell body resides. meaning: CL:0004001 + title: local interneuron CL:0000551: text: CL:0000551 - description: unimodal nocireceptor meaning: CL:0000551 + title: unimodal nocireceptor CL:0003006: text: CL:0003006 - description: G4-ON retinal ganglion cell + description: A G4 retinal ganglion cell that has post sympatic terminals in + sublaminar layers S3 and S4 and is depolarized by illumination of its receptive + field center. meaning: CL:0003006 + title: G4-ON retinal ganglion cell CL:4023011: text: CL:4023011 - description: lamp5 GABAergic cortical interneuron + description: A GABAergic neuron located in the cerebral cortex that expresses + Lamp5 meaning: CL:4023011 + title: lamp5 GABAergic cortical interneuron CL:4023109: text: CL:4023109 - description: vasopressin-secreting magnocellular cell + description: A magnocellular neurosecretory cell that is capable of producing + and secreting vasopressin. meaning: CL:4023109 + title: vasopressin-secreting magnocellular cell CL:0000121: text: CL:0000121 - description: Purkinje cell + description: The output neuron of the cerebellar cortex. meaning: CL:0000121 + title: Purkinje cell CL:0000678: text: CL:0000678 - description: commissural neuron meaning: CL:0000678 + title: commissural neuron CL:0004252: text: CL:0004252 - description: medium field retinal amacrine cell + description: An amicrine that has a medium dendritic field. meaning: CL:0004252 + title: medium field retinal amacrine cell CL:0000103: text: CL:0000103 - description: bipolar neuron + description: A type of interneuron that has two neurites, usually an axon + and a dendrite, extending from opposite poles of an ovoid cell body. meaning: CL:0000103 + title: bipolar neuron CL:4033036: text: CL:4033036 - description: OFFx cell + description: An OFF bipolar cell that is fovea-specific and expresses FEZF1, + NXPH1 and NXPH2. meaning: CL:4033036 + title: OFFx cell CL:4023014: text: CL:4023014 - description: L5 vip cortical GABAergic interneuron (Mmus) + description: A vip GABAergic cortical interneuron with a soma found in L5. + L5 vip cells have mostly local morphology with some deep-projecting axons. + They show only moderate resistance, comparable to that of sst subclass and + unlike typical Vip subclass cells that tend to show high input resistance. + L5 vip cells show particularly low resting membrane potential. meaning: CL:4023014 + title: L5 vip cortical GABAergic interneuron (Mmus) CL:0008031: text: CL:0008031 - description: cortical interneuron + description: An interneuron that has its soma located in the cerebral cortex. meaning: CL:0008031 + title: cortical interneuron CL:0008010: text: CL:0008010 - description: cranial somatomotor neuron + description: A cranial motor neuron whose soma is located in the midbrain + andor hindbrain and which innervates the skeletal muscles of the eye or + tongue. meaning: CL:0008010 + title: cranial somatomotor neuron CL:0000637: text: CL:0000637 - description: chromophil cell of anterior pituitary gland + description: A cell that stains readily in the anterior pituitary gland. meaning: CL:0000637 + title: chromophil cell of anterior pituitary gland CL:0003014: text: CL:0003014 - description: G11 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a large dendritic + field, a medium dendritic arbor, and a medium length secondary dendrite + shaft. meaning: CL:0003014 + title: G11 retinal ganglion cell CL:4033029: text: CL:4033029 - description: diffuse bipolar 3a cell + description: An OFF calbindin-positive bipolar cell that has a large dendritic + field and stratifies narrowly close to the middle of the inner plexiform + layer. Its axon terminal is characterized by regularly branching and varicose + processes resembling beads on a string. Most of DB3a contacts with cones + are triad-associated. meaning: CL:4033029 + title: diffuse bipolar 3a cell CL:0002611: text: CL:0002611 - description: neuron of the dorsal spinal cord + description: A CNS neuron of the dorsal spinal cord. meaning: CL:0002611 + title: neuron of the dorsal spinal cord CL:0010010: text: CL:0010010 - description: cerebellar stellate cell meaning: CL:0010010 + title: cerebellar stellate cell CL:1000465: text: CL:1000465 - description: chromaffin cell of ovary + description: A chromaffin cell that is part of the ovary. meaning: CL:1000465 + title: chromaffin cell of ovary CL:0000761: text: CL:0000761 - description: type 9 cone bipolar cell (sensu Mus) + description: An ON-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the inner half of the inner + plexiform layer. The dendritic tree is wide and the dendritic convergence + indicates cone selectivity. The axon terminal is sparsely branched and terminates + in sublamina 5 of the inner plexiform layer. meaning: CL:0000761 + title: type 9 cone bipolar cell (sensu Mus) CL:0004226: text: CL:0004226 - description: monostratified amacrine cell + description: An amacrine cell with a small dendritic field with post-synaptic + terminals in S3 and S4. meaning: CL:0004226 + title: monostratified amacrine cell CL:0004253: text: CL:0004253 - description: wide field retinal amacrine cell + description: An amicrine that has a wide dendritic field. meaning: CL:0004253 + title: wide field retinal amacrine cell CL:4023075: text: CL:4023075 - description: L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron found in L6 that expresses + tyrosine hydroxylase. L6 Th+ SST cells have mostly local axonal arborization + within L6. meaning: CL:4023075 + title: L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus) CL:4023068: text: CL:4023068 - description: thalamic excitatory neuron + description: An excitatory neuron that has its soma located in the thalamic + complex. meaning: CL:4023068 + title: thalamic excitatory neuron CL:1000377: text: CL:1000377 - description: dense-core granulated cell of epithelium of trachea + description: A Feyrter cell that is part of the epithelium of trachea. meaning: CL:1000377 + title: dense-core granulated cell of epithelium of trachea CL:4023089: text: CL:4023089 - description: nest basket cell + description: A basket cell which has simpler dendritic arbors (compared to + small or large basket cells), and an axonal plexus of intermediate density, + composed of a few long, smooth axonal branches. meaning: CL:4023089 + title: nest basket cell CL:4023189: text: CL:4023189 - description: parasol ganglion cell of retina + description: A retinal ganglion cell located in the ganglion cell layer of + the retina. This cell projects to magnocellular cells in the lateral geniculate + nucleus (LGN). They have large cell bodies and extensive, branching dendritic + networks that contribute to their large receptive fields. meaning: CL:4023189 + title: parasol ganglion cell of retina CL:0000856: text: CL:0000856 - description: neuromast hair cell + description: Neuromast hair cell is a hair cell that acts as a sensory receptor + of the neuromast; it is morphologically polarized as a result of the relative + position of the single kinocilium and the clusters of stereocilia on its + apical surface. meaning: CL:0000856 + title: neuromast hair cell CL:4023025: text: CL:4023025 - description: long-range projecting sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron that is both an interneuron + and a projecting neuron. They are found in all layers from upper L2/3 down + to the bottom of L6. They have long-range projections, some with axons fading + into white matter. These cells have low rebound potential, low hyperpolarization + sag, and high variability in membrane time constant. meaning: CL:4023025 + title: long-range projecting sst GABAergic cortical interneuron (Mmus) CL:0003043: text: CL:0003043 - description: M10 retinal ganglion cell + description: A monostratified retinal ganglion cell with large soma and large + dendritic field, with dense dendritic arbor. meaning: CL:0003043 + title: M10 retinal ganglion cell CL:4023000: text: CL:4023000 - description: beta motor neuron + description: A motor neuron that innervates both intrafusal and extrafusal + muscle fibers. Low abundancy. They control both muscle contraction and responsiveness + of the sensory feedback from muscle spindles. meaning: CL:4023000 + title: beta motor neuron CL:4023048: text: CL:4023048 - description: L4/5 intratelencephalic projecting glutamatergic neuron of the - primary motor cortex + description: An intratelencephalic-projecting glutamatergic with a soma located + in upper L5 of the primary motor cortex. These cells have thin untufted + apical dendrites. meaning: CL:4023048 + title: L4/5 intratelencephalic projecting glutamatergic neuron of the primary + motor cortex CL:0000855: text: CL:0000855 - description: sensory hair cell + description: Hair cell is a mechanoreceptor cell that is sensitive to movement + of the hair-like projections (stereocilia and kinocilia) which relay the + information centrally in the nervous system. meaning: CL:0000855 + title: sensory hair cell CL:4023070: text: CL:4023070 - description: caudal ganglionic eminence derived GABAergic cortical interneuron + description: A GABAergic cortical interneuron that develops from the caudal + ganglionic eminence and has migrated to the cerebral cortex. meaning: CL:4023070 + title: caudal ganglionic eminence derived GABAergic cortical interneuron CL:0002070: text: CL:0002070 - description: type I vestibular sensory cell + description: Bottle-shaped with narrow neck; broad, rounded basal portion + where nucleus is located; stereocilia and a single kinocilium is present + apically; receive nerve bouton at their base from an afferent cup-shaped + (chalice or calyx) nerve ending. meaning: CL:0002070 + title: type I vestibular sensory cell CL:2000028: text: CL:2000028 - description: cerebellum glutamatergic neuron + description: Any glutamatergic neuron that is part of a cerebellum. meaning: CL:2000028 + title: cerebellum glutamatergic neuron CL:0000533: text: CL:0000533 - description: primary motor neuron (sensu Teleostei) + description: A primary neuron (sensu Teleostei) that has a motor function. meaning: CL:0000533 + title: primary motor neuron (sensu Teleostei) CL:4023083: text: CL:4023083 - description: chandelier cell + description: An interneuron that selectively innervates the axon initial segment + of pyramidal cells. Their local axonal clusters are formed by high-frequency + branching at shallow angles, often ramifying around, above or below their + somata with a high bouton density. The characteristic terminal portions + of the axon form short vertical rows of boutons, resembling a chandelier. + Chandelier cells can be multipolar or bitufted. meaning: CL:4023083 + title: chandelier cell CL:2000034: text: CL:2000034 - description: anterior lateral line neuromast hair cell + description: Any neuromast hair cell that is part of a anterior lateral line. meaning: CL:2000034 + title: anterior lateral line neuromast hair cell CL:0003015: text: CL:0003015 - description: G11-ON retinal ganglion cell + description: A G11 retinal ganglion cell that has post synaptic terminals + in sublaminar layer S4 and is depolarized by illumination of its receptive + field center. meaning: CL:0003015 + title: G11-ON retinal ganglion cell CL:0000204: text: CL:0000204 - description: acceleration receptive cell meaning: CL:0000204 + title: acceleration receptive cell CL:4033031: text: CL:4033031 - description: diffuse bipolar 4 cell + description: An ON diffuse bipolar cell that predominantly connects to ON + parasol cells and lateral amacrine cells. meaning: CL:4033031 + title: diffuse bipolar 4 cell CL:0003024: text: CL:0003024 - description: retinal ganglion cell C inner + description: A retinal ganglion cell C with medium cell bodies and large dendritic + field. meaning: CL:0003024 + title: retinal ganglion cell C inner CL:4023074: text: CL:4023074 - description: mammillary body neuron + description: A neuron that has its soma located in the mammillary body. meaning: CL:4023074 + title: mammillary body neuron CL:2000089: text: CL:2000089 - description: dentate gyrus granule cell + description: A granule cell that has soma location in the dentate gyrus cell + layer of the hippocampal formation and has an elliptical cell body and characteristic + cone-shaped tree of spiny apical dendrites. The branches extend throughout + the molecular layer and the distal tips of the dendritic tree end just at + the hippocampal fissure or at the ventricular surface. The dentate gyrus + granule cell is the principal cell type of the dentate gyrus. meaning: CL:2000089 + title: dentate gyrus granule cell CL:4033028: text: CL:4033028 - description: diffuse bipolar 2 cell + description: An OFF diffuse bipolar cell that predominantly connects to ON + parasol cells and lateral amacrine cells. This cell contains a large number + of synaptic ribbons and a small axon arbor area. meaning: CL:4033028 + title: diffuse bipolar 2 cell CL:0000110: text: CL:0000110 - description: peptidergic neuron + description: A neuron that uses neuropeptides as transmitters. meaning: CL:0000110 + title: peptidergic neuron CL:4033002: text: CL:4033002 - description: neuroendocrine cell of epithelium of crypt of Lieberkuhn + description: A(n) neuroendocrine cell that is part of a(n) epithelium of crypt + of Lieberkuhn. meaning: CL:4033002 + title: neuroendocrine cell of epithelium of crypt of Lieberkuhn CL:4033027: text: CL:4033027 - description: diffuse bipolar 1 cell + description: An OFF diffuse bipolar cell that makes synaptic contact with + both L/M and S-cone photoreceptors and only minimal contact with rod photoreceptors. meaning: CL:4033027 + title: diffuse bipolar 1 cell CL:3000003: text: CL:3000003 - description: sympathetic cholinergic neuron + description: Sympathetic cholinergic neuron. meaning: CL:3000003 + title: sympathetic cholinergic neuron CL:4023158: text: CL:4023158 - description: octopus cell of the mammalian cochlear nucleus + description: A neuron in the posterior ventral cochlear nucleus that is distinguished + by their long, thick and tentacle-shaped dendrites that typically emanate + from one side of the cell body. meaning: CL:4023158 + title: octopus cell of the mammalian cochlear nucleus CL:0000118: text: CL:0000118 - description: basket cell + description: Basket cells are inhibitory GABAergic interneurons of the brain. + In general, dendrites of basket cells are free branching and contain smooth + spines. Axons are highly branched. The branched axonal arborizations give + rise to basket-like structures that surround the soma of the target cell. + Basket cells form axo-somatic synapses, meaning their synapses target somas + of other cells. meaning: CL:0000118 + title: basket cell CL:0004223: text: CL:0004223 - description: AB diffuse-1 amacrine cell + description: A amacrine cell with a small dendritic field and post-synaptic + terminals in S1, S2, S3, and S4. AB diffuse-1 amacrine cells have a tent-shaped + dendritic arbor and undulate dendrites. meaning: CL:0004223 + title: AB diffuse-1 amacrine cell CL:4030054: text: CL:4030054 - description: RXFP1-positive interface island D1-medium spiny neuron + description: A DRD1-expressing medium spiny neuron that is part of dense, + RXFP1-positive cell islands throughout the nucleus accumbens, putamen, and + near the adjacent septal nuclei. meaning: CL:4030054 + title: RXFP1-positive interface island D1-medium spiny neuron CL:0002610: text: CL:0002610 - description: raphe nuclei neuron + description: A neuron of the raphe nuclei. meaning: CL:0002610 + title: raphe nuclei neuron CL:4023026: text: CL:4023026 - description: direct pathway medium spiny neuron + description: A medium spiny neuron that expresses dopamine type 1 receptors + and projects to the globus pallidus internus or the substantia nigra pars + reticulata. meaning: CL:4023026 + title: direct pathway medium spiny neuron CL:4023016: text: CL:4023016 - description: vip GABAergic cortical interneuron + description: A GABAergic neuron located in the cerebral cortex that expresses + vasoactive intestinal polypeptide meaning: CL:4023016 + title: vip GABAergic cortical interneuron CL:0004237: text: CL:0004237 - description: fountain amacrine cell + description: A retinal amacrine cell with a medium dendritic field and post-synaptic + terminals in S1, S2, S3, and S4. meaning: CL:0004237 + title: fountain amacrine cell CL:0003035: text: CL:0003035 - description: M6 retinal ganglion cell + description: A monostratified retinal ganglion cell that contains opsin. meaning: CL:0003035 + title: M6 retinal ganglion cell CL:1001611: text: CL:1001611 - description: cerebellar neuron + description: Neuron of the cerebellum. meaning: CL:1001611 + title: cerebellar neuron CL:0000591: text: CL:0000591 - description: warmth sensing thermoreceptor cell + description: A thermoreceptor cell that detects increased temperatures. meaning: CL:0000591 + title: warmth sensing thermoreceptor cell CL:0002613: text: CL:0002613 - description: striatum neuron + description: A neuron of the striatum. meaning: CL:0002613 + title: striatum neuron CL:0000496: text: CL:0000496 - description: green sensitive photoreceptor cell + description: A photoreceptor cell that is sensitive to green light. meaning: CL:0000496 + title: green sensitive photoreceptor cell CL:0007011: text: CL:0007011 - description: enteric neuron + description: Neuron that is part of the enteric nervous system. meaning: CL:0007011 + title: enteric neuron CL:2000056: text: CL:2000056 - description: Meynert cell + description: Any pyramidal cell that is part of a regional part of cerebral + cortex. meaning: CL:2000056 + title: Meynert cell CL:0003040: text: CL:0003040 - description: M9 retinal ganglion cell + description: A monostratified retinal ganglion cell with large soma and large + dendritic field, with medium dendritic arbor, and has dendrites in layers + 1 and 5. meaning: CL:0003040 + title: M9 retinal ganglion cell CL:0004250: text: CL:0004250 - description: bistratified retinal amacrine cell + description: An amicrine that stratifies dendrites at two and only two locations. meaning: CL:0004250 + title: bistratified retinal amacrine cell CL:0003029: text: CL:0003029 - description: M2 retinal ganglion cell + description: A monostratified retinal ganglion cell that has a small soma, + a small dendrite field with a dense dendrite arbor, and post synaptic terminals + in sublaminer layer S2 and S3. meaning: CL:0003029 + title: M2 retinal ganglion cell CL:4023017: text: CL:4023017 - description: sst GABAergic cortical interneuron + description: A GABAergic neuron located in the cerebral cortex that expresses + somatostatin (sst) meaning: CL:4023017 + title: sst GABAergic cortical interneuron CL:0008028: text: CL:0008028 - description: visual system neuron meaning: CL:0008028 + title: visual system neuron CL:0008039: text: CL:0008039 - description: lower motor neuron + description: The motor neurons of vertebrates that directly innervate skeletal + muscles. They receive input from upper motor neurons. meaning: CL:0008039 + title: lower motor neuron CL:2000086: text: CL:2000086 - description: neocortex basket cell + description: Any basket cell that is part of a neocortex. meaning: CL:2000086 + title: neocortex basket cell CL:4023023: text: CL:4023023 - description: L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus) + description: A lamp 5 GABAergic cortical interneuron with neurogliaform morphology + with a soma found in L5,6. L5,6 NGC lamp5 have deep afterhyperpolarization + (AHP) but narrow action potentials (APs). Unlike other deep neurogliaform + cells (which are caudal ganglionic eminence (CGE) derived), L5,6 NGC lamp5 + cells are medial ganglionic eminence (MGE)-derived meaning: CL:4023023 + title: L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus) CL:0000697: text: CL:0000697 - description: R4 photoreceptor cell meaning: CL:0000697 + title: R4 photoreceptor cell CL:2000088: text: CL:2000088 - description: Ammon's horn basket cell + description: Any basket cell that is part of a Ammon's horn. meaning: CL:2000088 + title: Ammon's horn basket cell CL:0004232: text: CL:0004232 - description: starburst amacrine cell + description: An amacrine cell with a flat dendritic arbor and a medium dendritic + field. Starburst amacrine cells have post-synaptic terminals in S2. meaning: CL:0004232 + title: starburst amacrine cell CL:4023041: text: CL:4023041 - description: L5 extratelencephalic projecting glutamatergic cortical neuron + description: A glutamatergic neuron, with a soma found in the deeper portion + of L5, that has long-range axonal projections including deep subcortical + targets outside of the telencephalon and, in some cases, the spinal cord. + While the L5 ET neuron projections are not limited to ET targets, they are + clearly differentiated from the neuron subclasses whose projections are + constrained to intratelencephalic (IT) targets. L5 ET neurons are generally + the largest excitatory cortical neurons, typically having a thick apical + dendrite with a prominent dendritic tuft in layer 1 and displaying burst-firing + physiological characteristics. meaning: CL:4023041 + title: L5 extratelencephalic projecting glutamatergic cortical neuron CL:0004121: text: CL:0004121 - description: retinal ganglion cell B2 + description: A retinal ganglion cell B that has a very small but very dense + dendritic field, and has post synaptic terminals in S2. meaning: CL:0004121 + title: retinal ganglion cell B2 CL:0000748: text: CL:0000748 - description: retinal bipolar neuron + description: A bipolar neuron found in the retina and having connections with + photoreceptors cells and neurons in the inner plexiform layer. meaning: CL:0000748 + title: retinal bipolar neuron CL:4023164: text: CL:4023164 - description: globular bushy cell + description: A bushy cell that receives a large number of medium-sized synapses, + called modified endbulbs. Globular bushy cells extend to the superior olive + on both sides of the brainstem where they give input to the bipolar neurons. meaning: CL:4023164 + title: globular bushy cell CL:0000536: text: CL:0000536 - description: secondary motor neuron (sensu Teleostei) + description: A secondary neuron (sensu Teleostei) that has a motor function. meaning: CL:0000536 + title: secondary motor neuron (sensu Teleostei) CL:1000466: text: CL:1000466 - description: chromaffin cell of right ovary + description: A chromaffin cell that is part of the right ovary. meaning: CL:1000466 + title: chromaffin cell of right ovary CL:0011001: text: CL:0011001 - description: spinal cord motor neuron + description: A motor neuron that passes from the spinal cord toward or to + a muscle and conducts an impulse that causes movement. meaning: CL:0011001 + title: spinal cord motor neuron CL:0000755: text: CL:0000755 - description: type 3 cone bipolar cell (sensu Mus) + description: An OFF-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the outer half of the inner + plexiform layer. The dendritic tree is delicate and the dendritic tips appear + small when compared with type 1 cells. The axon terminal is stratified and + restricted to sublamina 2 of the inner plexiform layer. meaning: CL:0000755 + title: type 3 cone bipolar cell (sensu Mus) CL:0004238: text: CL:0004238 - description: asymmetric bistratified amacrine cell + description: A bistratified amacrine cell with a medium dendritic field, a + flat and sparse dendritic arbor, and post-synaptic terminals at the intersections + of S1 and S2, and S3 and S4. meaning: CL:0004238 + title: asymmetric bistratified amacrine cell CL:0004161: text: CL:0004161 - description: 510 nm-cone + description: A cone whose sensitivity measurements have an average spectral + peak of 510 nm. These cones are described in rat. meaning: CL:0004161 + title: 510 nm-cone CL:0000198: text: CL:0000198 - description: pain receptor cell + description: The peripheral receptor for pain. Includes receptors which are + sensitive to painful mechanical stimuli, extreme heat or cold, and chemical + stimuli. All mammalian nociceptors are free nerve endings. meaning: CL:0000198 + title: pain receptor cell CL:0003038: text: CL:0003038 - description: M7-OFF retinal ganglion cell + description: An M7 retinal ganglion cells with synaptic terminals in S2 and + is depolarized by decreased illumination of their receptive field center meaning: CL:0003038 + title: M7-OFF retinal ganglion cell CL:0003033: text: CL:0003033 - description: M4 retinal ganglion cell + description: A monostratified retinal ganglion cell that has a large soma, + a medium dendritic field with post synaptic terminals in sublaminar layer + S3. meaning: CL:0003033 + title: M4 retinal ganglion cell CL:0012001: text: CL:0012001 - description: neuron of the forebrain + description: A CNS neuron of the forebrain. meaning: CL:0012001 + title: neuron of the forebrain CL:0011104: text: CL:0011104 - description: interplexiform cell + description: A type of interneuron in the retinal inner nuclear layer which + carries information from the inner plexiform layer and the outer plexiform + layer. meaning: CL:0011104 + title: interplexiform cell CL:0003049: text: CL:0003049 - description: M cone cell + description: A cone cell that detects medium wavelength light. Exact peak + of spectra detected differs between species. In humans, spectra peaks at + 534-545 nm. meaning: CL:0003049 + title: M cone cell CL:2000032: text: CL:2000032 - description: peripheral nervous system neuron + description: A neuron that is part of a peripheral nervous system. meaning: CL:2000032 + title: peripheral nervous system neuron CL:0011100: text: CL:0011100 - description: galanergic neuron + description: Neuron that secretes the neurotransmitter galanin. meaning: CL:0011100 + title: galanergic neuron CL:0008025: text: CL:0008025 - description: noradrenergic neuron + description: A neuron that release noradrenaline (noriphinephrine) as a neurotransmitter. meaning: CL:0008025 + title: noradrenergic neuron CL:0000122: text: CL:0000122 - description: stellate neuron + description: A neuron that has dendritic processes radiating from the cell + body forming a star-like shape. meaning: CL:0000122 + title: stellate neuron CL:0003005: text: CL:0003005 - description: G4 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a small dendritic + field and dense dendritic arbor. meaning: CL:0003005 + title: G4 retinal ganglion cell CL:0000699: text: CL:0000699 - description: paraganglial type 1 cell + description: A type of glomus or chief cell, is sensitive to hypoxia and produce + catecholamines. meaning: CL:0000699 + title: paraganglial type 1 cell CL:4033050: text: CL:4033050 - description: catecholaminergic neuron + description: A neuron that releases catecholamine as a neurotransmitter. meaning: CL:4033050 + title: catecholaminergic neuron CL:1001502: text: CL:1001502 - description: mitral cell + description: The large glutaminergic nerve cells whose dendrites synapse with + axons of the olfactory receptor neurons in the glomerular layer of the olfactory + bulb, and whose axons pass centrally in the olfactory tract to the olfactory + cortex. meaning: CL:1001502 + title: mitral cell CL:0002069: text: CL:0002069 - description: type II vestibular sensory cell + description: Mostly cylindrical, resemble Type 1 in their contents and the + presence of a kinocilium and stereocilium apically; much greater variation + in size, some almost span the entire thickness of the sensory epithelium, + while others are smaller than Type 1; receive multiple efferent nerve boutons + around their bases as well as afferent endings, which are small expansions + rather than chalices. meaning: CL:0002069 + title: type II vestibular sensory cell CL:4023065: text: CL:4023065 - description: meis2 expressing cortical GABAergic cell + description: A GABAergic cell located in the cerebral cortex that expresses + meis2. meaning: CL:4023065 + title: meis2 expressing cortical GABAergic cell CL:4023077: text: CL:4023077 - description: bitufted neuron + description: A type of interneuron that has two clusters of dendritic branches + that originate directly from the soma and extend in opposite directions + and axons that form a plexus which spreads widely. Compared to bipolar neurons, + bitufted neurons have branching that occur close to the soma. meaning: CL:4023077 + title: bitufted neuron CL:0000847: text: CL:0000847 - description: ciliated olfactory receptor neuron + description: An olfactory receptor cell in which the apical ending of the + dendrite is a pronounced ciliated olfactory knob. meaning: CL:0000847 + title: ciliated olfactory receptor neuron CL:4023188: text: CL:4023188 - description: midget ganglion cell of retina + description: A retinal ganglion cell that originate in the ganglion cell layer + of the retina, and project to the parvocellular layers of the lateral geniculate + nucleus (LGN). These cells are known as midget retinal ganglion cells due + to the small sizes of their dendritic trees and cell bodies. meaning: CL:4023188 + title: midget ganglion cell of retina CL:2000090: text: CL:2000090 - description: dentate gyrus of hippocampal formation stellate cell + description: Any stellate cell that is part of a dentate gyrus of hippocampal + formation. meaning: CL:2000090 + title: dentate gyrus of hippocampal formation stellate cell CL:0000568: text: CL:0000568 - description: amine precursor uptake and decarboxylation cell + description: A cell that originates in the neural crest, that has certain + cytochemical and ultrastructural characteristics and is found scattered + throughout the body; types include melanocytes, the cells of the chromaffin + system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, + lungs, gastrointestinal tract, and pancreas. This cell type concentrates + the amino acid precursors of certain amines and decarboxylate them, forming + amines that function as regulators and neurotransmitters. This cell type + produces substances such as epinephrine, norepinephrine, dopamine, serotonin, + enkephalin, somatostatin, neurotensin, and substance P, the actions of which + may affect contiguous cells, nearby groups of cells, or distant cells, thus + functioning as local or systemic hormones. The name is an acronym for amine + precursor uptake and decarboxylation cell. meaning: CL:0000568 + title: amine precursor uptake and decarboxylation cell CL:1000426: text: CL:1000426 - description: chromaffin cell of adrenal gland + description: A chromaffin cell that is part of the adrenal gland. meaning: CL:1000426 + title: chromaffin cell of adrenal gland CL:0000100: text: CL:0000100 - description: motor neuron + description: An efferent neuron that passes from the central nervous system + or a ganglion toward or to a muscle and conducts an impulse that causes + or inhibits movement. meaning: CL:0000100 + title: motor neuron CL:0011109: text: CL:0011109 - description: hypocretin-secreting neuron + description: A neuron that releases hypocretin as a neurotransmitter. meaning: CL:0011109 + title: hypocretin-secreting neuron CL:4023171: text: CL:4023171 - description: trigeminal motor neuron + description: A trigeminal neuron that is responsible for motor functions such + as biting and chewing. meaning: CL:4023171 + title: trigeminal motor neuron CL:1001434: text: CL:1001434 - description: olfactory bulb interneuron + description: A neuron residing in the olfactory bulb that serve to process + and refine signals arising from olfactory sensory neurons meaning: CL:1001434 + title: olfactory bulb interneuron CL:0000494: text: CL:0000494 - description: UV sensitive photoreceptor cell + description: A photoreceptor cell that detects ultraviolet light. meaning: CL:0000494 + title: UV sensitive photoreceptor cell CL:0004117: text: CL:0004117 - description: retinal ganglion cell A + description: A monostratified retinal ganglion cell with large soma and large + dendritic field. meaning: CL:0004117 + title: retinal ganglion cell A CL:0000205: text: CL:0000205 - description: thermoreceptor cell + description: A cellular receptor which mediates the sense of temperature. + Thermoreceptor cells in vertebrates are mostly located under the skin. In + mammals there are separate types of thermoreceptors for cold and for warmth + and pain receptor cells which detect cold or heat extreme enough to cause + pain. meaning: CL:0000205 + title: thermoreceptor cell CL:0004217: text: CL:0004217 - description: H1 horizontal cell + description: A horizontal cell with a large cell body, thick dendrites, and + a large dendritic arbor. meaning: CL:0004217 + title: H1 horizontal cell CL:0000200: text: CL:0000200 - description: touch receptor cell meaning: CL:0000200 + title: touch receptor cell CL:4023111: text: CL:4023111 - description: cerebral cortex pyramidal neuron + description: A pyramidal neuron with soma located in the cerebral cortex. meaning: CL:4023111 + title: cerebral cortex pyramidal neuron CL:4032001: text: CL:4032001 - description: reelin GABAergic cortical interneuron + description: A GABAergic interneuron located in the cerebral cortex that expresses + reelin (rln). meaning: CL:4032001 + title: reelin GABAergic cortical interneuron CL:4023076: text: CL:4023076 - description: Martinotti neuron + description: An interneuron that has Martinotti morphology. These interneurons + are scattered throughout various layers of the cerebral cortex, sending + their axons up to the cortical layer I where they form axonal arborization. meaning: CL:4023076 + title: Martinotti neuron CL:0000753: text: CL:0000753 - description: type 1 cone bipolar cell (sensu Mus) + description: An OFF-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the outer half of the inner + plexiform layer. The cell body of these cells is in the middle of the inner + plexiform layer. The dendritic tree is stout and the axon terminates in + sublamina 1. The axonal terminal is wide and has only a few varicosities. meaning: CL:0000753 + title: type 1 cone bipolar cell (sensu Mus) CL:1001451: text: CL:1001451 - description: sensory neuron of dorsal root ganglion + description: A sensory neuron of the dorsal root ganglia that senses body + position and sends information about how much the muscle is stretched to + the spinal cord. meaning: CL:1001451 + title: sensory neuron of dorsal root ganglion CL:4023021: text: CL:4023021 - description: static gamma motor neuron + description: A gamma motor neuron that innervates static nuclear bag fibers + (bag2 fibers) and increases their firing, in response to an increase in + the magnitude of change in length, and controls the static sensitivity of + the stretch reflex. meaning: CL:4023021 + title: static gamma motor neuron CL:0002066: text: CL:0002066 - description: Feyrter cell + description: A neuroendocrine cell found in the epithelium of the lungs and + respiratory tract. This cell type is rounded or elliptical in shape, situated + mainly in the basal part of the epithelium; regulates bronchial secretion, + smooth muscle contraction, lobular growth, ciliary activity and chemoreception. + Cell has an electron-lucent cytoplasm, contains numerous dense-cored vesicles + with a clear halo between the core and the limiting membrane. meaning: CL:0002066 + title: Feyrter cell CL:0000598: text: CL:0000598 - description: pyramidal neuron + description: Pyramidal neurons have a pyramid-shaped soma with a single axon, + a large apical dendrite and multiple basal dendrites. The apex and an apical + dendrite typically point toward the pial surface and other dendrites and + an axon emerging from the base. The axons may have local collaterals but + also project outside their region. Pyramidal neurons are found in the cerebral + cortex, the hippocampus, and the amygdala. meaning: CL:0000598 + title: pyramidal neuron CL:0000702: text: CL:0000702 - description: R5 photoreceptor cell meaning: CL:0000702 + title: R5 photoreceptor cell CL:0008049: text: CL:0008049 - description: Betz cell + description: A giant pyramidal neuron with a soma in layer Vb of the primary + motor cortex that sends its axons down the spinal cord via the corticospinal + tract, either synapsing directly with alpha motor neurons, or targeting + interneurons in the spinal cord. In humans, Betz cells are the largest known + in the central nervous system. meaning: CL:0008049 + title: Betz cell CL:0001033: text: CL:0001033 - description: hippocampal granule cell + description: Granule cell with a soma found in the hippocampus. meaning: CL:0001033 + title: hippocampal granule cell CL:0000587: text: CL:0000587 - description: cold sensing thermoreceptor cell + description: A thermoreceptor cell that detects reduced temperatures. meaning: CL:0000587 + title: cold sensing thermoreceptor cell CL:4023161: text: CL:4023161 - description: unipolar brush cell + description: An excitatory glutamatergic interneuron found in the granular + layer of the cerebellar cortex and also in the granule cell domain of the + cochlear nucleus. Unipolar brush cells have a round or oval cell body with + usually a single short dendrite that ends in a brush-like tuft of short + dendrites unique to them known as dendrioles. meaning: CL:4023161 + title: unipolar brush cell CL:2000031: text: CL:2000031 - description: lateral line ganglion neuron + description: Any neuron that is part of a lateral line ganglion. meaning: CL:2000031 + title: lateral line ganglion neuron CL:4023119: text: CL:4023119 - description: displaced amacrine cell + description: A subpopulation of amacrine cell that migrate further than other + amacrine cells, and come to lie basal to the inner plexiform layer (IPL) + in the ganglion cell layer. Displaced amacrine cells still have their neurites + extending apically into the IPL, and therefore exhibit an inverted polarity + with respect to the other amacrine cells. meaning: CL:4023119 + title: displaced amacrine cell CL:1001569: text: CL:1001569 - description: hippocampal interneuron + description: An interneuron with a soma found in the hippocampus. meaning: CL:1001569 + title: hippocampal interneuron CL:4023130: text: CL:4023130 - description: kisspeptin neuron + description: A neuron that expresses kisspeptin. These neurons are predominantly + located in the hypothalamus, but also found in other parts of the brain + including the hippocampal dentate gyrus. meaning: CL:4023130 + title: kisspeptin neuron CL:4023090: text: CL:4023090 - description: small basket cell + description: A basket cell with axonal arbors composed of frequent, short, + curvy axonal branches that tend to be near their somata and within the same + layer. meaning: CL:4023090 + title: small basket cell CL:4023033: text: CL:4023033 - description: OFF retinal ganglion cell + description: A retinal ganglion cell that is depolarized by decreased illumination + of their receptive field center. meaning: CL:4023033 + title: OFF retinal ganglion cell CL:4023112: text: CL:4023112 - description: vestibular afferent neuron + description: An afferent neuron of the vestibular system that innervate the + base of the hair cell and increase or decrease their neural firing rate + as the receptor cell is excited or inhibited. meaning: CL:4023112 + title: vestibular afferent neuron CL:0004234: text: CL:0004234 - description: diffuse multistratified amacrine cell + description: An amacrine cell with a medium dendritic field and post-synaptic + terminals in S2, and in S3-S4. meaning: CL:0004234 + title: diffuse multistratified amacrine cell CL:0002082: text: CL:0002082 - description: type II cell of adrenal medulla + description: A chromaffin cell of the adrenal medulla that produces epinephrine. meaning: CL:0002082 + title: type II cell of adrenal medulla CL:0010011: text: CL:0010011 - description: cerebral cortex GABAergic interneuron + description: A GABAergic interneuron whose soma is located in the cerebral + cortex. meaning: CL:0010011 + title: cerebral cortex GABAergic interneuron CL:4030052: text: CL:4030052 - description: nucleus accumbens shell and olfactory tubercle D2 medium spiny - neuron + description: A DRD2-expressing medium spiny neuron that is part of a nucleus + accumbens shell or olfactory tubercle. meaning: CL:4030052 + title: nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron CL:0000604: text: CL:0000604 - description: retinal rod cell + description: One of the two photoreceptor cell types of the vertebrate retina. + In rods the photopigment is in stacks of membranous disks separate from + the outer cell membrane. Rods are more sensitive to light than cones, but + rod mediated vision has less spatial and temporal resolution than cone vision. meaning: CL:0000604 + title: retinal rod cell CL:4030027: text: CL:4030027 - description: GABAergic amacrine cell + description: An amacrine cell that uses GABA as a neurotransmitter. meaning: CL:4030027 + title: GABAergic amacrine cell CL:1001561: text: CL:1001561 - description: vomeronasal sensory neuron + description: Chemosensitive cells that innervate the vomernasal organ epithelium + and are responsible for receiving and transmitting pheromone signals. meaning: CL:1001561 + title: vomeronasal sensory neuron CL:0000210: text: CL:0000210 - description: photoreceptor cell + description: A cell specialized to detect and transduce light. meaning: CL:0000210 + title: photoreceptor cell CL:4023012: text: CL:4023012 - description: near-projecting glutamatergic cortical neuron + description: A glutamatergic neuron located in the cerebral cortex that projects + axons locally rather than distantly. meaning: CL:4023012 + title: near-projecting glutamatergic cortical neuron CL:4023087: text: CL:4023087 - description: fan Martinotti neuron + description: A Martinotti neuron that has axons that form a fan-like plexus. meaning: CL:4023087 + title: fan Martinotti neuron CL:0000028: text: CL:0000028 - description: CNS neuron (sensu Nematoda and Protostomia) meaning: CL:0000028 + title: CNS neuron (sensu Nematoda and Protostomia) CL:0000006: text: CL:0000006 - description: neuronal receptor cell meaning: CL:0000006 + title: neuronal receptor cell CL:0004247: text: CL:0004247 - description: bistratified cell + description: A neuron that stratifies dendrites at two and only two locations. meaning: CL:0004247 + title: bistratified cell CL:0010012: text: CL:0010012 - description: cerebral cortex neuron + description: A CNS neuron of the cerebral cortex. meaning: CL:0010012 + title: cerebral cortex neuron CL:0004245: text: CL:0004245 - description: indoleamine-accumulating amacrine cell + description: An amacrine cell with a wide dendritic field and post-synaptic + terminals in S5. meaning: CL:0004245 + title: indoleamine-accumulating amacrine cell CL:0004224: text: CL:0004224 - description: AB diffuse-2 amacrine cell + description: A broadly stratifying amacrine cell that has a small dendritic + field and post-synaptic terminals in S2 and S3. meaning: CL:0004224 + title: AB diffuse-2 amacrine cell CL:0003009: text: CL:0003009 - description: G6 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a medium dendritic + field and a sparse dendritic arbor with post sympatic terminals in sublaminar + layer S4 and S5. meaning: CL:0003009 + title: G6 retinal ganglion cell CL:0000679: text: CL:0000679 - description: glutamatergic neuron + description: A neuron that is capable of some neurotansmission by glutamate + secretion. meaning: CL:0000679 + title: glutamatergic neuron CL:0000166: text: CL:0000166 - description: chromaffin cell + description: A cell that stores epinephrine secretory vesicles. During times + of stress, the nervous system signals the vesicles to secrete their hormonal + content. Their name derives from their ability to stain a brownish color + with chromic salts. Characteristically, they are located in the adrenal + medulla and paraganglia of the sympathetic nervous system. meaning: CL:0000166 + title: chromaffin cell CL:4023088: text: CL:4023088 - description: large basket cell + description: A basket cell that is large, and typically ascends to give rise + to many long horizontally and vertically projecting axon collaterals that + traverse neighboring columns and can extend through all cortical layers. meaning: CL:4023088 + title: large basket cell CL:4030057: text: CL:4030057 - description: eccentric medium spiny neuron + description: A medium spiny neuron that exhibits transcriptional divergence + from direct and indirect spiny projection neurons, for example, enrichment + in Casz1, Otof, Cacng5 and Pcdh8 noted in mice. Whilst in general medium + spiny neurons have been found to be differentially distributed across the + basal ganglia, the eccentric medium spiny neuron cell type has been found + to be more evenly distributed throughout cerebral nuclei. meaning: CL:4030057 + title: eccentric medium spiny neuron CL:4023024: text: CL:4023024 - description: neurogliaform lamp5 GABAergic cortical interneuron (Mmus) + description: A lamp5 GABAergic cortical interneuron with layer-adapting morphology. + NGC lamp5 cells have a small round soma, short dendrites, and a wide dense + axonal arbor that tends to establish a dense axonal mesh with high connection + probability both to themselves and L2 pyramidal cells. NGC lamp5 cells have + unique synaptic properties that distinguish them from other GABAergic interneurons, + including the release of GABA to the extracellular space via volume transmission, + and the ability to produce GABA-B responses in connected postsynaptic targets. meaning: CL:4023024 + title: neurogliaform lamp5 GABAergic cortical interneuron (Mmus) CL:0005024: text: CL:0005024 - description: somatomotor neuron + description: A motor neuron that innervates a skeletal muscle. These motor + neurons are all excitatory and cholinergic. meaning: CL:0005024 + title: somatomotor neuron CL:4023049: text: CL:4023049 - description: L5 intratelencephalic projecting glutamatergic neuron of the - primary motor cortex + description: An intratelencephalic-projecting glutamatergic neuron with a + soma found in L5 of the primary motor cortex. meaning: CL:4023049 + title: L5 intratelencephalic projecting glutamatergic neuron of the primary + motor cortex CL:0000573: text: CL:0000573 - description: retinal cone cell + description: One of the two photoreceptor cell types in the vertebrate retina. + In cones the photopigment is in invaginations of the cell membrane of the + outer segment. Cones are less sensitive to light than rods, but they provide + vision with higher spatial and temporal acuity, and the combination of signals + from cones with different pigments allows color vision. meaning: CL:0000573 + title: retinal cone cell CL:4023123: text: CL:4023123 - description: hypothalamus kisspeptin neuron + description: A kisspeptin neuron that is located in the hypothalamus. These + neurons project to and activate gonadotrophin-releasing hormone neurons + (acting via the kisspeptin receptor) in the hypothalamus and stimulate the + secretion of gonadotrophin-releasing hormone. meaning: CL:4023123 + title: hypothalamus kisspeptin neuron CL:0000376: text: CL:0000376 - description: humidity receptor cell meaning: CL:0000376 + title: humidity receptor cell CL:0004235: text: CL:0004235 - description: AB broad diffuse-1 amacrine cell + description: An amacrine cell with a medium dendritic field and post-synaptic + terminals in S2 and S3. meaning: CL:0004235 + title: AB broad diffuse-1 amacrine cell CL:0000106: text: CL:0000106 - description: unipolar neuron + description: Neuron with one neurite that extends from the cell body. meaning: CL:0000106 + title: unipolar neuron CL:0001032: text: CL:0001032 - description: cortical granule cell + description: Granule cell that is part of the cerebral cortex. meaning: CL:0001032 + title: cortical granule cell CL:0000561: text: CL:0000561 - description: amacrine cell + description: Interneuron of the vertebrate retina. They integrate, modulate, + and interpose a temporal domain in the visual message presented to the retinal + ganglion cells, with which they synapse in the inner plexiform layer. They + lack large axons. meaning: CL:0000561 + title: amacrine cell CL:4023093: text: CL:4023093 - description: stellate pyramidal neuron + description: A pyramidal neuron which lacks a tuft formation but extends small + radial distances forming a star-like shape. meaning: CL:4023093 + title: stellate pyramidal neuron CL:0000247: text: CL:0000247 - description: Rohon-Beard neuron + description: Type of neuron that is a primary mechanosensory cell, with peripheral + neurites innervating the skin with free nerve endings. meaning: CL:0000247 + title: Rohon-Beard neuron CL:0003008: text: CL:0003008 - description: G5 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a medium dendritic + field and a medium dendritic arbor with post sympatic terminals in sublaminar + layer S2. meaning: CL:0003008 + title: G5 retinal ganglion cell CL:0000203: text: CL:0000203 - description: gravity sensitive cell meaning: CL:0000203 + title: gravity sensitive cell CL:0003037: text: CL:0003037 - description: M7-ON retinal ganglion cell + description: An M7 retinal ganglion cells with synaptic terminals in S4 and + is depolarized by illumination of its receptive field center. meaning: CL:0003037 + title: M7-ON retinal ganglion cell CL:0004221: text: CL:0004221 - description: flag A amacrine cell + description: A flag amacrine cell with post-synaptic terminals in S2 and S3. meaning: CL:0004221 + title: flag A amacrine cell CL:0000638: text: CL:0000638 - description: acidophil cell of pars distalis of adenohypophysis + description: An acidophilic chromophil cell that of the anterior pituitary + gland. meaning: CL:0000638 + title: acidophil cell of pars distalis of adenohypophysis CL:0004229: text: CL:0004229 - description: A2-like amacrine cell + description: A bistratified amacrine cell with a small dendritic field that + has dendrite stratification in S2, and in S3 and S4. meaning: CL:0004229 + title: A2-like amacrine cell CL:4023120: text: CL:4023120 - description: cochlea auditory hair cell + description: An auditory hair cell found in the cochlea. meaning: CL:4023120 + title: cochlea auditory hair cell CL:0008032: text: CL:0008032 - description: rosehip neuron + description: A GABAergic interneuron in human cortical layer 1 that has large + rosehip-shaped axonal boutons and compact arborization. meaning: CL:0008032 + title: rosehip neuron CL:0008027: text: CL:0008027 - description: rod bipolar cell (sensu Mus) + description: A bipolar neuron found in the retina that is synapsed by rod + photoreceptor cells. These neurons have axons that arborize and synapse + to targets in inner plexiform layers 4 and 5 and depolarize in response + to light. meaning: CL:0008027 + title: rod bipolar cell (sensu Mus) CL:0000497: text: CL:0000497 - description: red sensitive photoreceptor cell + description: A photoreceptor cell that is sensitive to red light. meaning: CL:0000497 + title: red sensitive photoreceptor cell CL:4023062: text: CL:4023062 - description: dentate gyrus neuron + description: A neuron with its soma located in the dentate gyrus of the hippocampus. meaning: CL:4023062 + title: dentate gyrus neuron CL:0002516: text: CL:0002516 - description: interrenal chromaffin cell + description: A chromaffin cell interspersed among the interrenal epithelial + layer of the anterior kidney of teloest fish. meaning: CL:0002516 + title: interrenal chromaffin cell CL:0004119: text: CL:0004119 - description: retinal ganglion cell B1 + description: A retinal ganglion cell B that has medium body size, medium dendritic + field and dense dendritic arbor, and has post synaptic terminals in S2. meaning: CL:0004119 + title: retinal ganglion cell B1 CL:4030039: text: CL:4030039 - description: von Economo neuron + description: An extratelencephalic-projecting glutamatergic cortical neuron + that is morphologically-defined with a large, spindle-shaped cell body, + thick bipolar dendrites with limited branching and a moderate density of + spines, and often an axon initial segment that emanates from the side of + the cell body. This cell type is associated with markers POU3F, BMP3 and + ITGA4. meaning: CL:4030039 + title: von Economo neuron CL:4023036: text: CL:4023036 - description: chandelier pvalb GABAergic cortical interneuron + description: A pvalb GABAergic cortical interneuron that is recognizable by + the straight terminal axonal 'cartridges' of vertically oriented strings + of synaptic boutons. Chandelier PV cells' boutons target exclusively the + axon initial segment (AIS) of pyramidal cells, with a single cell innervating + hundreds of pyramidal cells in a clustered manner. meaning: CL:4023036 + title: chandelier pvalb GABAergic cortical interneuron CL:0000117: text: CL:0000117 - description: CNS neuron (sensu Vertebrata) meaning: CL:0000117 + title: CNS neuron (sensu Vertebrata) CL:4023015: text: CL:4023015 - description: sncg GABAergic cortical interneuron + description: A GABAergic neuron located in the cerebral cortex that expresses + Gamma-synuclein meaning: CL:4023015 + title: sncg GABAergic cortical interneuron CL:4033033: text: CL:4033033 - description: flat midget bipolar cell + description: An OFF bipolar cell with a small dendritic tree that provides + most of the triad-associated basal (flat) contacts at cone pedicles. meaning: CL:4033033 + title: flat midget bipolar cell CL:0000626: text: CL:0000626 - description: olfactory granule cell + description: Granule cell that is part of the olfactory bulb. meaning: CL:0000626 + title: olfactory granule cell CL:0004218: text: CL:0004218 - description: H2 horizontal cell + description: A horizontal cell with a small cell body, thin dendrites, and + small dendritic arbor. meaning: CL:0004218 + title: H2 horizontal cell CL:0004233: text: CL:0004233 - description: DAPI-3 amacrine cell + description: An amacrine cell with a medium dendritic field and post-synaptic + terminals that stratify at S2, with a second stratification that occurs + in S3 and S4. meaning: CL:0004233 + title: DAPI-3 amacrine cell CL:0003021: text: CL:0003021 - description: retinal ganglion cell C4 + description: A retinal ganglion cell C outer that has a medium dendritic field + and a dense dendritic arbor. meaning: CL:0003021 + title: retinal ganglion cell C4 CL:0000489: text: CL:0000489 - description: scotopic photoreceptor cell meaning: CL:0000489 + title: scotopic photoreceptor cell CL:4023159: text: CL:4023159 - description: double bouquet cell + description: An interneuron that has double bouquet morphology. meaning: CL:4023159 + title: double bouquet cell CL:0002612: text: CL:0002612 - description: neuron of the ventral spinal cord + description: A neuron of the ventral spinal cord. meaning: CL:0002612 + title: neuron of the ventral spinal cord CL:0000476: text: CL:0000476 - description: thyrotroph + description: A basophil cell of the anterior pituitary that produces thyroid + stimulating hormone, thyrotrophin. This cell type is elongated, polygonal + and lie in clusters towards the adenohypophyseal center. meaning: CL:0000476 + title: thyrotroph CL:4033034: text: CL:4033034 - description: invaginating midget bipolar cell + description: An ON bipolar cell with a small dendritic tree that forms most + of the central (invaginating) elements opposite the synaptic ribbon at the + cone triad. meaning: CL:4033034 + title: invaginating midget bipolar cell CL:4023029: text: CL:4023029 - description: indirect pathway medium spiny neuron + description: A medium spiny neuron that expresses dopamine type 2 receptors + and projects to the external globus pallidus. meaning: CL:4023029 + title: indirect pathway medium spiny neuron CL:0004236: text: CL:0004236 - description: AB broad diffuse-2 amacrine cell + description: An amacrine cell with a medium dendritic field and post-synaptic + terminals in S2, S3, and S4. meaning: CL:0004236 + title: AB broad diffuse-2 amacrine cell CL:0003017: text: CL:0003017 - description: retinal ganglion cell B3 outer + description: A retinal ganglion B cell that has post synaptic terminals in + S2. meaning: CL:0003017 + title: retinal ganglion cell B3 outer CL:0000759: text: CL:0000759 - description: type 7 cone bipolar cell (sensu Mus) + description: An ON-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the inner half of the inner + plexiform layer. The axon terminal is narrowly stratified and are found + just below a calretinin-expressing band in sublamina 4 of the inner plexiform + layer. meaning: CL:0000759 + title: type 7 cone bipolar cell (sensu Mus) CL:0000740: text: CL:0000740 - description: retinal ganglion cell + description: The set of neurons that receives neural inputs via bipolar, horizontal + and amacrine cells. The axons of these cells make up the optic nerve. meaning: CL:0000740 + title: retinal ganglion cell CL:0004120: text: CL:0004120 - description: retinal ganglion cell A1 + description: A retinal ganglion A cell found in the retina with large somata, + often polygonal in shape. The dendritic fields consist of three to seven + stout dendrites that are sparce near soma. Dendrites terminate in S4. meaning: CL:0004120 + title: retinal ganglion cell A1 CL:3000002: text: CL:3000002 - description: sympathetic noradrenergic neuron + description: Sympathetic noradrenergic neuron. meaning: CL:3000002 + title: sympathetic noradrenergic neuron CL:0003023: text: CL:0003023 - description: retinal ganglion cell C6 + description: A retinal ganglion cell C outer that has dense dendritic diversity. meaning: CL:0003023 + title: retinal ganglion cell C6 CL:0000690: text: CL:0000690 - description: R2 photoreceptor cell meaning: CL:0000690 + title: R2 photoreceptor cell CL:4023047: text: CL:4023047 - description: L2/3 intratelencephalic projecting glutamatergic neuron of the - primary motor cortex + description: An intratelencephalic-projecting glutamatergic neuron with a + soma found in cortical layer 2/3. meaning: CL:4023047 + title: L2/3 intratelencephalic projecting glutamatergic neuron of the primary + motor cortex CL:4023022: text: CL:4023022 - description: canopy lamp5 GABAergic cortical interneuron (Mmus) + description: A Lamp5 GABAergic cortical interneuron that has extended axons + in the surface of L1. Canopy Lamp5 cells resemble neurogliaform cells in + having elongated horizontal axonal arbors largely confined to L1; but the + dendritic arbors are wider and have fewer branches, while the axon is less + tortuous and extends further from the soma meaning: CL:4023022 + title: canopy lamp5 GABAergic cortical interneuron (Mmus) CL:4023060: text: CL:4023060 - description: hippocampal CA1-3 neuron + description: A neuron that has its soma located in CA1-3 of the hippocampus. meaning: CL:4023060 + title: hippocampal CA1-3 neuron CL:0000758: text: CL:0000758 - description: type 6 cone bipolar cell (sensu Mus) + description: An ON-bipolar neuron found in the retina and having connections + with cone photoreceptors cells and neurons in the inner half of the inner + plexiform layer. The cell has a loose, delicate axon terminal that opens + in sublamina 3 of the inner plexiform layer and descends into sublamina + 4. meaning: CL:0000758 + title: type 6 cone bipolar cell (sensu Mus) CL:0000535: text: CL:0000535 - description: secondary neuron (sensu Teleostei) + description: A neuron of teleosts that develops later than a primary neuron, + typically during the larval stages. meaning: CL:0000535 + title: secondary neuron (sensu Teleostei) CL:4023055: text: CL:4023055 - description: corticothalamic VAL/VM projecting glutamatergic neuron of the - primary motor cortex + description: A corticothalamic-projecting glutamatergic neuron that is located + in L6 and lower L5 of the primary motor cortex, with a pyramidal morphology + and mostly untufted apical dendrites terminating in midcortical layers. + CT VAL/VM (ventroanterior-ventrolateral complex/ventromedial nucleus) cells + have a near tonic firing pattern and are distinguished from L6 IT neurons + by a lower inter-spike interval adaptation index. meaning: CL:4023055 + title: corticothalamic VAL/VM projecting glutamatergic neuron of the primary + motor cortex CL:1000467: text: CL:1000467 - description: chromaffin cell of left ovary + description: A chromaffin cell that is part of the left ovary. meaning: CL:1000467 + title: chromaffin cell of left ovary CL:0011002: text: CL:0011002 - description: lateral motor column neuron + description: A motor neuron that is generated only on limb levels and send + axons into the limb mesenchyme. meaning: CL:0011002 + title: lateral motor column neuron CL:0004244: text: CL:0004244 - description: WF4 amacrine cell + description: An amacrine cell with a wide dendritic field, dendrites in S4, + and post-synaptic terminals in S4. meaning: CL:0004244 + title: WF4 amacrine cell CL:1000223: text: CL:1000223 - description: lung neuroendocrine cell meaning: CL:1000223 + title: lung neuroendocrine cell CL:1000385: text: CL:1000385 - description: type 2 vestibular sensory cell of epithelium of crista of ampulla - of semicircular duct of membranous labyrinth + description: A type II vestibular sensory cell that is part of the epithelium + of crista of ampulla of semicircular duct of membranous labyrinth. meaning: CL:1000385 + title: type 2 vestibular sensory cell of epithelium of crista of ampulla of + semicircular duct of membranous labyrinth CL:0000691: text: CL:0000691 - description: stellate interneuron meaning: CL:0000691 + title: stellate interneuron CL:4023008: text: CL:4023008 - description: intratelencephalic-projecting glutamatergic cortical neuron + description: A glutamatergic neuron located in the cerebral cortex that projects + to structures of telencephalic origins. meaning: CL:4023008 + title: intratelencephalic-projecting glutamatergic cortical neuron CL:4023044: text: CL:4023044 - description: non-medulla, extratelencephalic-projecting glutamatergic neuron - of the primary motor cortex + description: An extratelencephalic-projecting glutamatergic neuron located + in layer 5b of the primary motor cortex that does not project to the medulla. + Non-MY ET cells are large, big-tufted cells with the apical dendrite often + bifurcating close to the soma, suggesting they are corticospinal cells. + Non-MY ET cells have bigger hyperpolarization sag, lower input resistance, + and smaller AP width, compared to L5 IT neurons. meaning: CL:4023044 + title: non-medulla, extratelencephalic-projecting glutamatergic neuron of + the primary motor cortex CL:0000850: text: CL:0000850 - description: serotonergic neuron + description: A neuron that releases serotonin as a neurotransmitter. meaning: CL:0000850 + title: serotonergic neuron CL:0000695: text: CL:0000695 - description: Cajal-Retzius cell + description: A neuron of the human embryonic marginal zone which display, + as a salient feature, radial ascending processes that contact the pial surface, + and a horizontal axon plexus located in the deep marginal zone. One feature + of these cells in mammals is that they express the Reelin gene. meaning: CL:0000695 + title: Cajal-Retzius cell CL:0003051: text: CL:0003051 - description: UV cone cell + description: A cone cell that detects ultraviolet (UV) wavelength light. meaning: CL:0003051 + title: UV cone cell CL:0000402: text: CL:0000402 - description: CNS interneuron + description: An interneuron that has its cell body in a central nervous system. meaning: CL:0000402 + title: CNS interneuron CL:0005023: text: CL:0005023 - description: branchiomotor neuron + description: Cranial motor neuron which innervates muscles derived from the + branchial (pharyngeal) arches. meaning: CL:0005023 + title: branchiomotor neuron CL:4023043: text: CL:4023043 - description: L5/6 near-projecting glutamatergic neuron of the primary motor - cortex + description: A near-projecting glutamatergic neuron with a soma found in layer + 5/6 of the primary motor cortex. meaning: CL:4023043 + title: L5/6 near-projecting glutamatergic neuron of the primary motor cortex CL:0004162: text: CL:0004162 - description: 360 nm-cone + description: A cone whose sensitivity measurements have an average spectral + peak of 358.2 nm. These cones are described in rat. meaning: CL:0004162 + title: 360 nm-cone CL:0011003: text: CL:0011003 - description: magnocellular neurosecretory cell + description: A neurosecretory neuron residing mainly in the hypothalamic supraoptic + and paraventricular nuclei and in a number of smaller accessory cell groups + between these two nuclei, that is capable of secreting the hormones oxytocin + or vasopressin, and sometimes both, into the systemic circulation. meaning: CL:0011003 + title: magnocellular neurosecretory cell CL:0004230: text: CL:0004230 - description: diffuse bistratified amacrine cell + description: A bistratified amacrine cell with a small dendritic field that + has post-synaptic terminals in S1 and the border of S1-S2, and termination + of a second arbor within the border of S2-S3 and S3. meaning: CL:0004230 + title: diffuse bistratified amacrine cell CL:1001505: text: CL:1001505 - description: parvocellular neurosecretory cell + description: The secretory neurons of the paraventricular nucleus that synthesize + and secrete vasopressin, corticotropin-releasing factor (CRF) and thyrotropin-releasing + hormone (TRH) into blood vessels in the hypothalamo-pituitary portal system. meaning: CL:1001505 + title: parvocellular neurosecretory cell CL:0011106: text: CL:0011106 - description: GABAnergic interplexiform cell + description: A type of interneuron in the retinal inner nuclear layer which + carries information from the inner plexiform layer and the outer plexiform + layer using GABA. meaning: CL:0011106 + title: GABAnergic interplexiform cell CL:0000437: text: CL:0000437 - description: gonadtroph + description: A rounded cell that is usually situated next to sinusoids; secretes + follicular stimulating hormone (FSH) and luteinizing hormone (LH). meaning: CL:0000437 + title: gonadtroph CL:4023010: text: CL:4023010 - description: alpha7 GABAergic cortical interneuron (Mmus) + description: A GABAergic cortical interneuron that is strongly labelled for + α7 nAChRs. These cells have soma found in L1 and have multipolar dendrites + with vertically descending axonal collaterals that project deep into the + column, usually branching and terminating in L5A. meaning: CL:4023010 + title: alpha7 GABAergic cortical interneuron (Mmus) CL:4023046: text: CL:4023046 - description: L6b subplate glutamatergic neuron of the primary motor cortex + description: An excitatory glutamatergic neuron transcriptomically related + to the CT subclass, with a soma preferentially located in the bottom of + L6 of the primary motor cortex. meaning: CL:4023046 + title: L6b subplate glutamatergic neuron of the primary motor cortex CL:0000109: text: CL:0000109 - description: adrenergic neuron meaning: CL:0000109 + title: adrenergic neuron CL:0011000: text: CL:0011000 - description: dorsal horn interneuron + description: A CNS interneuron located in the dorsal horn of the spinal cord. meaning: CL:0011000 + title: dorsal horn interneuron CL:0000251: text: CL:0000251 - description: extramedullary cell meaning: CL:0000251 + title: extramedullary cell CL:0003044: text: CL:0003044 - description: M11 retinal ganglion cell + description: A bistratified ganglion cell with small, dense dendritic fields + that terminate in S1 and S3. meaning: CL:0003044 + title: M11 retinal ganglion cell CL:4023053: text: CL:4023053 - description: spinal interneuron synapsing Betz cell + description: A Betz cell that syanpses with spinal interneurons. meaning: CL:4023053 + title: spinal interneuron synapsing Betz cell CL:1000378: text: CL:1000378 - description: type 1 vestibular sensory cell of stato-acoustic epithelium + description: A type I vestibular sensory cell that is part of the stato-acoustic + epithelium. meaning: CL:1000378 + title: type 1 vestibular sensory cell of stato-acoustic epithelium CL:4023124: text: CL:4023124 - description: dentate gyrus kisspeptin neuron + description: A kisspeptin neuron that is located in the dentate gyrus of the + hippocampus. meaning: CL:4023124 + title: dentate gyrus kisspeptin neuron CL:1000427: text: CL:1000427 - description: adrenal cortex chromaffin cell + description: A chromaffin cell that is part of the adrenal cortex. meaning: CL:1000427 + title: adrenal cortex chromaffin cell CL:0000207: text: CL:0000207 - description: olfactory receptor cell meaning: CL:0000207 + title: olfactory receptor cell CL:4023162: text: CL:4023162 - description: bushy cell + description: A neuron found in the anterior part of the ventral cochlear nucleus + that has the appearance of bushes, having short dendrites. Bushy cells give + outputs to different parts of the superior olivary complex. meaning: CL:4023162 + title: bushy cell CL:2000019: text: CL:2000019 - description: compound eye photoreceptor cell + description: Any photoreceptor cell that is part of a compound eye. meaning: CL:2000019 + title: compound eye photoreceptor cell CL:4023086: text: CL:4023086 - description: T Martinotti neuron + description: A Martinotti neuron that has axons that form a horizontal ramification, + making it T-shaped. meaning: CL:4023086 + title: T Martinotti neuron CL:0003012: text: CL:0003012 - description: G9 retinal ganglion cell + description: A mono-stratified retinal ganglion cell that has a large dendritic + field and a medium dendritic arbor with post synaptic terminals in sublaminar + layer S1 and S2. meaning: CL:0003012 + title: G9 retinal ganglion cell CL:0002270: text: CL:0002270 - description: type EC2 enteroendocrine cell + description: A type EC enteroendocrine cell in the duodenum and jejunum that + stores and secretes motilin and 5-hydroxytryptamine. meaning: CL:0002270 + title: type EC2 enteroendocrine cell CL:2000024: text: CL:2000024 - description: spinal cord medial motor column neuron + description: Any neuron that is part of a spinal cord medial motor column. meaning: CL:2000024 + title: spinal cord medial motor column neuron CL:0003022: text: CL:0003022 - description: retinal ganglion cell C5 + description: A retinal ganglion cell C outer that has medium dendritic density + and field size. meaning: CL:0003022 + title: retinal ganglion cell C5 CL:0000104: text: CL:0000104 - description: multipolar neuron + description: A neuron with three or more neurites, usually an axon and multiple + dendrites. meaning: CL:0000104 + title: multipolar neuron CL:4023050: text: CL:4023050 - description: L6 intratelencephalic projecting glutamatergic neuron of the - primary motor cortex + description: An intratelencephalic-projecting glutamatergic neuron with a + soma found in L6 of the primary motor cortex. These cells are short untufted + pyramidal cells, which could be stellate or inverted. meaning: CL:4023050 + title: L6 intratelencephalic projecting glutamatergic neuron of the primary + motor cortex CL:4023030: text: CL:4023030 - description: L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus) + description: A sst GABAergic cortical interneuron that has "fanning-out' Martinotti + morphology that is found in layer 2/3/5 of the cerebral cortex. They have + local axon arbor and long ascending axons that spreads horizontally and + arborizes significantly in L1. meaning: CL:4023030 + title: L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus) CL:0000741: text: CL:0000741 - description: spinal accessory motor neuron + description: A motor neuron that is located in the cervical region of the + spinal cord and selectively innervates the sternocleidmastoid or trapezius + muscle. Unlike other motor neurons, they extend axons dorsally along lateral + margins of the spinal cord. meaning: CL:0000741 + title: spinal accessory motor neuron CL:4033010: text: CL:4033010 - description: neuroendocrine cell of epithelium of lobar bronchus + description: A(n) neuroendocrine cell that is part of a(n) epithelium of lobar + bronchus. meaning: CL:4033010 + title: neuroendocrine cell of epithelium of lobar bronchus CL:1000425: text: CL:1000425 - description: chromaffin cell of paraganglion + description: A chromaffin cell that is part of the paraganglion. meaning: CL:1000425 + title: chromaffin cell of paraganglion CL:4030051: text: CL:4030051 - description: nucleus accumbens shell and olfactory tubercle D1 medium spiny - neuron + description: A DRD1-expressing medium spiny neuron that is part of a nucleus + accumbens shell or olfactory tubercle. meaning: CL:4030051 + title: nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron CL:0000567: text: CL:0000567 - description: polymodal nocireceptor meaning: CL:0000567 + title: polymodal nocireceptor CL:0004215: text: CL:0004215 - description: type 5a cone bipolar cell + description: A type 5 cone bipolar cell with narrowly stratified post synaptic + terminals. meaning: CL:0004215 + title: type 5a cone bipolar cell CL:0003032: text: CL:0003032 - description: M3-OFF retinal ganglion cell + description: A monostratified retinal ganglion cell that has post synaptic + terminals in sublaminar layer S2 and is depolarized by decreased illumination + of their receptive field center meaning: CL:0003032 + title: M3-OFF retinal ganglion cell CL:4023079: text: CL:4023079 - description: midbrain-derived inhibitory neuron + description: A GABAergic inhibitory neuron that is derived from the midbrain. meaning: CL:4023079 + title: midbrain-derived inhibitory neuron CL:0000099: text: CL:0000099 - description: interneuron + description: Most generally any neuron which is not motor or sensory. Interneurons + may also refer to neurons whose axons remain within a particular brain region + as contrasted with projection neurons which have axons projecting to other + brain regions. meaning: CL:0000099 + title: interneuron CL:0000253: text: CL:0000253 - description: eurydendroid cell meaning: CL:0000253 + title: eurydendroid cell CL:0008013: text: CL:0008013 - description: cranial visceromotor neuron + description: A visceromotor motor neuron whose soma is located in the hindbrain, + and which synapses to parasympathetic neurons that innervate tear glands, + sweat glands, and the smooth muscles of the head. meaning: CL:0008013 + title: cranial visceromotor neuron CL:0005000: text: CL:0005000 - description: spinal cord interneuron + description: A CNS interneuron located in the spinal cord. meaning: CL:0005000 + title: spinal cord interneuron CL:0004222: text: CL:0004222 - description: flag B amacrine cell + description: A flag amacrine cell with post-synaptic terminals in S3, S4, + and S5. meaning: CL:0004222 + title: flag B amacrine cell CL:0000617: text: CL:0000617 - description: GABAergic neuron + description: A neuron that uses GABA as a vesicular neurotransmitter meaning: CL:0000617 + title: GABAergic neuron CL:0003010: text: CL:0003010 - description: G7 retinal ganglion cell + description: A bistratified retinal ganglion cell that has a dendrite field + that terminates in sublaminar layer S2 and a second dendrite field that + terminates in sublaminar layer S4. meaning: CL:0003010 + title: G7 retinal ganglion cell CL:0000577: text: CL:0000577 - description: type EC enteroendocrine cell + description: A subtype of enteroendocrine cells found in the gastrointestinal + mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. + These cell type secretes serotonin and some neurotransmitters including + enkephalins and substance P. Their secretory granules stain readily with + silver (argentaffin stain). meaning: CL:0000577 + title: type EC enteroendocrine cell CL:0003018: text: CL:0003018 - description: retinal ganglion cell B3 inner + description: A retinal ganglion B3 cell with dentrites terminating in S4. meaning: CL:0003018 + title: retinal ganglion cell B3 inner CL:0002083: text: CL:0002083 - description: type I cell of adrenal medulla + description: A chromaffin cell of the adrenal medulla that produces norepinephrine. meaning: CL:0002083 + title: type I cell of adrenal medulla CL:4023081: text: CL:4023081 - description: inverted L6 intratelencephalic projecting glutamatergic neuron - of the primary motor cortex (Mmus) + description: a L6 intratelencephalic projecting glutamatergic neuron of the + primary motor cortex that has inverted pyramidal morphology. meaning: CL:4023081 + title: inverted L6 intratelencephalic projecting glutamatergic neuron of the + primary motor cortex (Mmus) CL:0004251: text: CL:0004251 - description: narrow field retinal amacrine cell + description: An amicrine that has a narrow dendritic field. meaning: CL:0004251 + title: narrow field retinal amacrine cell CL:4023092: text: CL:4023092 - description: inverted pyramidal neuron + description: A pyramidal neuron which has an apical tree which is oriented + towards the white matter. meaning: CL:4023092 + title: inverted pyramidal neuron CL:0002608: text: CL:0002608 - description: hippocampal neuron + description: A neuron with a soma found in the hippocampus. meaning: CL:0002608 + title: hippocampal neuron CL:0008048: text: CL:0008048 - description: upper motor neuron + description: A glutamatergic motor neuron with a soma in the brainstem or + cerebral cortex. They do not synapse directly to muscles but rather to + lower motor neurons, which do. They are the main controllers of voluntary + movement. meaning: CL:0008048 + title: upper motor neuron CL:0011113: text: CL:0011113 - description: spiral ganglion neuron + description: Neuron found in the spiral ganglion. meaning: CL:0011113 + title: spiral ganglion neuron CL:0000601: text: CL:0000601 - description: cochlear outer hair cell + description: A mechanoreceptor in the organ of Corti. In mammals the outer + hair cells are arranged in three rows which are further from the modiolus + than the single row of inner hair cells. The motile properties of the outer + hair cells may contribute actively to tuning the sensitivity and frequency + selectivity of the cochlea. meaning: CL:0000601 + title: cochlear outer hair cell CL:0003041: text: CL:0003041 - description: M9-ON retinal ganglion cell + description: An M9 retinal ganglion cells with synaptic terminals in S2 and + is depolarized by illumination of its receptive field center. meaning: CL:0003041 + title: M9-ON retinal ganglion cell CL:4023042: text: CL:4023042 - description: L6 corticothalamic-projecting glutamatergic cortical neuron + description: A corticothalamic-projecting neuron with a soma found in cortical + layer 6. meaning: CL:4023042 + title: L6 corticothalamic-projecting glutamatergic cortical neuron CL:0000199: text: CL:0000199 - description: mechanoreceptor cell + description: A cell specialized to transduce mechanical stimuli and relay + that information centrally in the nervous system. meaning: CL:0000199 + title: mechanoreceptor cell CL:1001571: text: CL:1001571 - description: hippocampal pyramidal neuron + description: A pyramidal neuron with a soma found in the hippocampus. meaning: CL:1001571 + title: hippocampal pyramidal neuron CL:2000048: text: CL:2000048 - description: anterior horn motor neuron + description: A lower motor neuron whose soma is located in the anterior horn. + Anterior horn motor neurons project from the anterior portion of the grey + matter in the spinal cord to some skeletal muscles. meaning: CL:2000048 + title: anterior horn motor neuron CL:4023170: text: CL:4023170 - description: trigeminal sensory neuron + description: A trigeminal neuron that is responsible for sensation in the + face. meaning: CL:4023170 + title: trigeminal sensory neuron CL:0002614: text: CL:0002614 - description: neuron of the substantia nigra + description: A neuron of the substantia nigra. meaning: CL:0002614 + title: neuron of the substantia nigra diff --git a/docs/gallery/plot_term_set.py b/docs/gallery/plot_term_set.py index 8bf2375aa..15c35a5bc 100644 --- a/docs/gallery/plot_term_set.py +++ b/docs/gallery/plot_term_set.py @@ -149,6 +149,7 @@ # Similar to wrapping datasets, :py:class:`~hdmf.term_set.TermSetWrapper` can be wrapped around any attribute. # To validate attributes, the user will set the attribute to the wrapped value, in which validation must pass # for the object to be created. +# breakpoint() data = VectorData( name='species', description=TermSetWrapper(value='Homo sapiens', termset=terms), diff --git a/docs/gallery/schemasheets/nwb_static_enums.yaml b/docs/gallery/schemasheets/nwb_static_enums.yaml index 222205959..52af4b8a7 100644 --- a/docs/gallery/schemasheets/nwb_static_enums.yaml +++ b/docs/gallery/schemasheets/nwb_static_enums.yaml @@ -2,8 +2,7 @@ classes: BrainSample: slot_usage: cell_type: {} - slots: - - cell_type + slots: [cell_type] default_prefix: TEMP default_range: string description: this schema demonstrates the use of static enums @@ -11,42 +10,27 @@ enums: NeuronOrGlialCellTypeEnum: description: Enumeration to capture various cell types found in the brain. permissible_values: - ASTROCYTE: - description: Characteristic star-shaped glial cells in the brain and spinal - cord. - meaning: CL:0000127 - INTERNEURON: - description: Neurons whose axons (and dendrites) are limited to a single brain - area. - meaning: CL:0000099 - MICROGLIAL_CELL: - description: Microglia are the resident immune cells of the brain and constantly - patrol the cerebral microenvironment to respond to pathogens and damage. - meaning: CL:0000129 - MOTOR_NEURON: - description: Neurons whose cell body is located in the motor cortex, brainstem - or the spinal cord, and whose axon (fiber) projects to the spinal cord or - outside of the spinal cord to directly or indirectly control effector organs, - mainly muscles and glands. - meaning: CL:0000100 - OLIGODENDROCYTE: - description: Type of neuroglia whose main functions are to provide support - and insulation to axons within the central nervous system (CNS) of jawed - vertebrates. - meaning: CL:0000128 - PYRAMIDAL_NEURON: - description: Neurons with a pyramidal shaped cell body (soma) and two distinct - dendritic trees. - meaning: CL:0000598 + ASTROCYTE: {description: Characteristic star-shaped glial cells in the brain + and spinal cord., meaning: 'CL:0000127'} + INTERNEURON: {description: Neurons whose axons (and dendrites) are limited to + a single brain area., meaning: 'CL:0000099'} + MICROGLIAL_CELL: {description: Microglia are the resident immune cells of the + brain and constantly patrol the cerebral microenvironment to respond to + pathogens and damage., meaning: 'CL:0000129'} + MOTOR_NEURON: {description: 'Neurons whose cell body is located in the motor + cortex, brainstem or the spinal cord, and whose axon (fiber) projects to + the spinal cord or outside of the spinal cord to directly or indirectly + control effector organs, mainly muscles and glands.', meaning: 'CL:0000100'} + OLIGODENDROCYTE: {description: Type of neuroglia whose main functions are to + provide support and insulation to axons within the central nervous system + (CNS) of jawed vertebrates., meaning: 'CL:0000128'} + PYRAMIDAL_NEURON: {description: Neurons with a pyramidal shaped cell body (soma) + and two distinct dendritic trees., meaning: 'CL:0000598'} id: https://w3id.org/linkml/examples/nwb_static_enums -imports: -- linkml:types +imports: ['linkml:types'] name: nwb_static_enums -prefixes: - CL: http://purl.obolibrary.org/obo/CL_ - TEMP: https://example.org/TEMP/ - linkml: https://w3id.org/linkml/ +prefixes: {CL: 'http://purl.obolibrary.org/obo/CL_', TEMP: 'https://example.org/TEMP/', + linkml: 'https://w3id.org/linkml/'} slots: - cell_type: - required: true + cell_type: {required: true} title: static enums example diff --git a/src/hdmf/container.py b/src/hdmf/container.py index ca2c5252b..3a5477f5b 100644 --- a/src/hdmf/container.py +++ b/src/hdmf/container.py @@ -112,12 +112,6 @@ def _field_config(self, arg_name, val, type_map): itself is only one file. When a user loads custom configs, the config is appended/modified. The modifications are not written to file, avoiding permanent modifications. """ - # If the val has been manually wrapped then skip checking the config for the attr - if isinstance(val, TermSetWrapper): - msg = "Field value already wrapped with TermSetWrapper." - warn(msg) - return val - configurator = type_map.type_config if len(configurator.path)>0: @@ -127,6 +121,12 @@ def _field_config(self, arg_name, val, type_map): else: return val + # If the val has been manually wrapped then skip checking the config for the attr + if isinstance(val, TermSetWrapper): + msg = "Field value already wrapped with TermSetWrapper." + warn(msg) + return val + # check to see that the namespace for the container is in the config if self.namespace not in termset_config['namespaces']: msg = "%s not found within loaded configuration." % self.namespace