From ee866425fb0d637b7175b177c148523a4e1f52d7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Taavi=20P=C3=A4ll?= Date: Wed, 3 Mar 2021 08:40:24 +0200 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 453d435..f7cf183 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # ena-upload -Snakemake workflow to trim and upload Sars-Cov-2 reads to ENA. +Snakemake workflow to trim and upload Sars-Cov-2 reads to ENA. This workflow uses [ena-upload-cli](https://github.com/usegalaxy-eu/ena-upload-cli) for upload and updated *process_xlsx.py* script for metadata table preparation from [Galaxys ena_upload tool](https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload). Raw reads are adapter-trimmed using [bbduk.sh](https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbduk-guide/) tool and mapped to host/human reference genome using [bbmap.sh](https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/). ## Install