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SC_AD_FORM.txt
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Summarize the experiments reported in the paper and how they were run. (Example: We ran the NAS Parallel Benchmarks v3.3.1 on NERSC's Cori supercomputer with both Cray's version of MPICH 3.2.1 and with our SuperPGAS communication layer (v0.2), as described in the paper.). MathJax is enabled so you can enter LaTeX mathematical notation within \(...\) or \[...\].
We ran our experiment on NERSC's Edison supercomputer and our MongoDB instance is also provided by NERSC database services. Both of our MongoDB test driver and MIQS test driver are written in C and are deployed on one-process-per-computing-node basis. We compare the indexing performance, search performance and storage consumption of MongoDB and MIQS in our experiment, and the result is reported as written in the paper.
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URL/DOI:
https://github.com/zhangwei217245/HDF5Meta
Relevant hardware details, e.g., system names, makes, models, and key components such as CPUs, accelerators, and filesystems.
Cray XC30 supercomputer/2*12-core Intel "Ivy Bridge" processor at 2.4 GHz/Each node has 64 GB DDR3 1866 MHz memory (four 8 GB DIMMs per socket)/Lustre file system peak @ 700GB/s
Operating systems and versions (e.g., "Ubuntu 17.10 running Linux kernel 4.13.0")
SuSE Linux Enterprise Server running lightweight Linux Kernel 4.4.162
Compilers and versions (e.g., "Clang++ v6.0")
GCC 7.3.0
Applications and versions (e.g., "NAMD v2.13" or "SPEC CPU2017")
Libraries and versions (e.g., "OpenMPI v3.1.0")
HDF5 1.10.2.
Key algorithms (e.g., "conjugate gradient")
Adaptive Radix Tree and Red-Black Tree and their corresponding operations
Input datasets and versions (e.g., "Berkeley Segmentation Dataset: Test Image #296059 [color]")
HDF5 files generated by Baryon Oscillation Spectroscopic Survey
Modifications made for the paper: describe how the hardware and software listed in the previous section was improved or otherwise altered.
[BLANK]
Output from commands that gather execution environment information — see example scripts at
SLURM_NODELIST=nid0[1572-1573]
LESSKEY=/etc/lesskey.bin
PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL
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PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_mic_knl=160
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PE_HDF5_PARALLEL_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.2.0/@PRGENV@/@PE_HDF5_PARALLEL_GENCOMPS@/lib/pkgconfig
PROFILEREAD=true
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PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU
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PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU
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PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl=86
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PE_GA_DEFAULT_VOLATILE_PRGENV=GNU
PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=71 61 51 49
PMI_CONTROL_PORT=63186
PE_MPICH_GENCOMPS_GNU=71 51 49
MORE=-sl
PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=160
PE_PKGCONFIG_PRODUCTS=PE_HDF5_PARALLEL:PE_LIBSCI:PE_MPICH
PE_MPICH_DEFAULT_GENCOMPILERS_GNU=7.1 5.1 4.9
FPATH=:/opt/cray/pe/modules/3.2.10.6/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.10.6/init/sh_funcs/no_redirect:/opt/cray/pe/modules/3.2.10.6/init/sh_funcs/no_redirect
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PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL
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PE_HDF5_PARALLEL_FIXED_PRGENV=CRAY INTEL
PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.7
PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=86
PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6
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USER=USER
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PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL
PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=86
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MPICH_MPIIO_DVS_MAXNODES=14
PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge
PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6
PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0
CRAY_PRGENVGNU=loaded
HOSTTYPE=x86_64
PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL
PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH
ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.1.3/libApp/
PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH
SRUN_DEBUG=3
RCLOCAL_PRGENV=true
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.3
PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0
gcc_already_loaded=0
PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=82 71 53 49
PE_HDF5_PARALLEL_FORTRAN_PKGCONFIG_LIBS=hdf5hl_fortran_parallel:hdf5_fortran_parallel
GCC_VERSION=7.3.0
PE_PRODUCT_LIST=CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:CRAYPE_IVYBRIDGE:GNU:GCC
FROM_HEADER=
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6
PE_LIBSCI_GENCOMPS_INTEL_x86_64=160
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=7.1 5.3 4.9
PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 61
CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpt/7.7.3
PAGER=less
COLOR_BLACK=\e[0;30m
SLURM_LAUNCH_NODE_IPADDR=10.128.6.142
ALPS_LLI_STATUS_OFFSET=1
JAVA_PATH=/opt/java/jdk1.8.0_51
PE_MPICH_GENCOMPILERS_CRAY=8.6
PE_PETSC_DEFAULT_GENCOMPS_INTEL_skylake=160
PE_LIBSCI_GENCOMPILERS_GNU_x86_64=7.1 6.1 5.1 4.9
PE_MPICH_MODULE_NAME=cray-mpich
PE_PETSC_DEFAULT_GENCOMPS_GNU_skylake=61
PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0
CSHEDIT=emacs
SLURM_STEP_ID=0
ALPS_APP_PE=0
PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU
PE_MPICH_TARGET_VAR_nvidia20=-lcudart
PE_CRAY_FIXED_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.2.0/CRAY/8.6/lib/pkgconfig
XDG_CONFIG_DIRS=/etc/xdg
PE_LIBSCI_GENCOMPS_CRAY_x86_64=86
PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=86
PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.6
PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI
LSCOLORS=ExFxCxDxBxegedabagacad
PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=86
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=82 71 53 49
CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari/include -I/opt/cray/gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari/include
PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=51 49
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_mic_knl=71 53
LIBGL_DEBUG=quiet
PE_NETCDF_DEFAULT_GENCOMPS_GNU=
DVS_VERSION=0.9.0
MINICOM=-c on
PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci
USERMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview
CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/18.07.1
CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/18.07.1
SLURM_TASKS_PER_NODE=48(x2)
PE_HDF5_PARALLEL_PKGCONFIG_LIBS=hdf5_hl_parallel:hdf5_parallel
PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW2:PE_FFTW
MAIL=/var/mail/USER
PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 5.3 4.9
PATH=/global/homes/w/USER/.cargo/bin:/global/homes/w/USER/tools/cmake-3.14.0-rc3/bin:/global/homes/w/USER/software/cgdb/release/bin:/global/homes/w/USER/.cargo/bin:/global/homes/w/USER/tools/cmake-3.14.0-rc3/bin:/global/homes/w/USER/software/cgdb/release/bin:/usr/common/software/darshan/3.1.4/bin:/usr/common/software/altd/2.0/bin:/usr/common/software/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/java/jdk1.8.0_51/bin:/opt/cray/pe/hdf5-parallel/1.10.2.0/bin:/opt/cray/pe/hdf5/1.10.2.0/bin:/opt/cray/rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari/bin:/opt/cray/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari/sbin:/opt/cray/job/2.2.3-6.0.7.0_44.1__g6c4e934.ari/bin:/opt/cray/pe/craype/2.5.15/bin:/opt/gcc/7.3.0/bin:/global/homes/w/USER/.cargo/bin:/global/homes/w/USER/tools/cmake-3.14.0-rc3/bin:/global/homes/w/USER/software/cgdb/release/bin:/opt/cray/pe/mpt/7.7.3/gni/bin:/opt/ovis/bin:/opt/ovis/sbin:/usr/syscom/nsg/sbin:/usr/syscom/nsg/bin:/opt/cray/pe/modules/3.2.10.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin
PE_MPICH_GENCOMPILERS_GNU=7.1 5.1 4.9
COLOR_GRAY=\e[0;30m
LIBGL_ALWAYS_INDIRECT=1
MODULE_VERSION=3.2.10.6
PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=86
PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.10.2.0/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig
SLURM_STEP_LAUNCHER_PORT=62382
PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=8.2 7.1 6.1 5.3 4.9
PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9
PE_FFTW_DEFAULT_TARGET_abudhabi=abudhabi
PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 5.3 4.9
PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=86
PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_skylake=8.2 7.1 6.1
XTPE_NETWORK_TARGET=aries
PE_HDF5_PARALLEL_BASEDIR=/opt/cray/pe/hdf5-parallel/1.10.2.0
ATP_IGNORE_SIGTERM=1
CPU=x86_64
SLURM_WORKING_CLUSTER=edison:ctl1:6817:8448
PMI_CRAY_NO_SMP_ORDER=0
_=/usr/bin/env
SLURM_JOB_ID=12930506
PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=
LDMSD_PLUGIN_LIBPATH=/opt/ovis/lib64/ovis-ldms
PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64
PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY INTEL
PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=8.6
CRAY_PE_MODULES=cray-hdf5-parallel
CRAY_HDF5_DIR=/opt/cray/pe/hdf5-parallel/1.10.2.0
PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=
PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY INTEL
JAVA_BINDIR=/opt/java/jdk1.8.0_51/bin
PMI_NO_FORK=1
CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-6.0.7.0_33.18__g5196236.ari/lib64
PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64
PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=160
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6
PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=86
PE_MPICH_VOLATILE_PRGENV=CRAY GNU
PWD=/global/homes/w/USER/software/MIQS/build
CRAYPE_VERSION=2.5.15
PE_TPSL_DEFAULT_GENCOMPS_GNU_mic_knl=71 53
CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari/lib64
INPUTRC=/etc/inputrc
SLURM_STEPID=0
SLURM_JOB_USER=USER
COLOR_LIGHT_CYAN=\e[1;36m
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=7.1 5.3 4.9
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0
PE_MPICH_DEFAULT_GENCOMPS_CRAY=86
TARGETMODULES=craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon
HDF5_ROOT=/opt/cray/pe/hdf5-parallel/1.10.2.0/GNU/7.1
_LMFILES_=/opt/cray/pe/modulefiles/modules/3.2.10.6:/usr/syscom/nsg/modulefiles/nsg/1.2.0:/opt/cray/pe/modulefiles/cray-mpich/7.7.3:/opt/modulefiles/gcc/7.3.0:/opt/cray/pe/craype/2.5.15/modulefiles/craype-ivybridge:/opt/cray/pe/craype/2.5.15/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/craype/2.5.15:/opt/cray/pe/modulefiles/cray-libsci/18.07.1:/opt/cray/ari/modulefiles/udreg/2.3.2-6.0.7.0_33.18__g5196236.ari:/opt/cray/ari/modulefiles/ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari:/opt/cray/pe/modulefiles/pmi/5.0.14:/opt/cray/ari/modulefiles/dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari:/opt/cray/ari/modulefiles/gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari:/opt/cray/ari/modulefiles/xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari:/opt/cray/ari/modulefiles/job/2.2.3-6.0.7.0_44.1__g6c4e934.ari:/opt/cray/ari/modulefiles/dvs/2.7_2.2.116-6.0.7.1_8.11__g0dac9eb:/opt/cray/ari/modulefiles/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari:/opt/cray/ari/modulefiles/rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari:/opt/cray/pe/modulefiles/atp/2.1.3:/opt/cray/pe/modulefiles/PrgEnv-gnu/6.0.4:/opt/cray/pe/modulefiles/cray-hdf5-parallel/1.10.2.0:/opt/modulefiles/java/jdk1.8.0_51:/usr/common/software/modulefiles/altd/2.0:/usr/common/software/modulefiles/darshan/3.1.4:/opt/modulefiles/Base-opts/2.4.135-6.0.7.0_38.1__g718f891.ari
PE_LIBSCI_DEFAULT_OMP_REQUIRES=
JAVA_HOME=/opt/java/jdk1.8.0_51
SLURM_SRUN_COMM_HOST=10.128.6.142
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.6
PE_TPSL_DEFAULT_GENCOMPILERS_GNU_mic_knl=7.1 5.3
PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_skylake=8.6
PE_LIBSCI_MODULE_NAME=cray-libsci/18.07.1
SLURM_CPU_BIND_TYPE=mask_cpu:
PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.10.2.0/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.3/gni/mpich-intel/16.0/lib/pkgconfig
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_skylake=82 71 61
PE_MPICH_NV_LIBS_nvidia20=-lcudart
JAVA_VERSION=jdk1.8.0_51
PYTHONSTARTUP=/etc/pythonstart
PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.3/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig
MODULEPATH=/opt/cray/pe/craype/2.5.15/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/usr/common/software/modulefiles:/usr/syscom/nsg/modulefiles:/usr/common/das/modulefiles:/usr/common/ftg/modulefiles:/usr/common/graphics/modulefiles:/usr/common/jgi/modulefiles:/usr/common/tig/modulefiles:/opt/cray/craype/default/modulefiles:/opt/cray/ari/modulefiles
PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.6
SLURM_UMASK=0022
SLURM_PTY_WIN_COL=71
TZ=US/Pacific
SDK_HOME=/usr/lib64/jvm/java
CRAYPE_USE_BUILDTOOLS=0
NSG_HOME=/usr/syscom/nsg
SHMEM_ABORT_ON_ERROR=1
MAN_POSIXLY_CORRECT=1
LOADEDMODULES=modules/3.2.10.6:nsg/1.2.0:cray-mpich/7.7.3:gcc/7.3.0:craype-ivybridge:craype-network-aries:craype/2.5.15:cray-libsci/18.07.1:udreg/2.3.2-6.0.7.0_33.18__g5196236.ari:ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari:pmi/5.0.14:dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari:gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari:xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari:job/2.2.3-6.0.7.0_44.1__g6c4e934.ari:dvs/2.7_2.2.116-6.0.7.1_8.11__g0dac9eb:alps/6.6.43-6.0.7.0_26.4__ga796da3.ari:rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari:atp/2.1.3:PrgEnv-gnu/6.0.4:cray-hdf5-parallel/1.10.2.0:java/jdk1.8.0_51:altd/2.0:darshan/3.1.4:Base-opts/2.4.135-6.0.7.0_38.1__g718f891.ari
SLURM_JOB_UID=74291
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_mic_knl=16.0
PE_PKG_CONFIG_PATH=/opt/cray/pe/cti/1.0.7/lib/pkgconfig:/opt/cray/pe/cti/1.0.6/lib/pkgconfig
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos=82 71 53 49
PE_FFTW_DEFAULT_TARGET_ivybridge=ivybridge
CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari/lib64
PE_FFTW_DEFAULT_TARGET_x86_skylake=x86_skylake
PE_FFTW_DEFAULT_TARGET_share=share
SLURM_NODEID=0
SLURM_SUBMIT_DIR=/global/u2/w/USER/software/MIQS/build
PE_LIBSCI_OMP_REQUIRES_openmp=_mp
CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari/include -I/opt/cray/krca/2.2.4-6.0.7.1_5.40__g8505b97.ari/include -I/opt/cray-hss-devel/8.0.0/include
PE_HDF5_MODULE_NAME=cray-hdf5-parallel
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_skylake=8.6
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_skylake=6.1
SLURM_STEP_RESV_PORTS=63186
PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx
CRAY_MPICH_DIR=/opt/cray/pe/mpt/7.7.3/gni/mpich-gnu/7.1
PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl=86
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0
SLURM_TASK_PID=17798
PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_ALTERNATE_LIBS_@multithreaded@:PE_MPICH_ALTERNATE_LIBS_@dpm@
PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=160
SLURM_CPUS_ON_NODE=48
PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.6
CRAY_MPICH2_VER=7.7.3
CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.14/lib64
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=16.0
PE_MPICH_PKGCONFIG_LIBS=mpich
PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY INTEL
PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/18.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig
SLURM_PROCID=0
SLURM_JOB_NODELIST=nid0[1572-1573]
PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL
GPG_TTY=/dev/pts/0
COLOR_BROWN=\e[0;33m
PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL
PE_MPICH_ALTERNATE_LIBS_multithreaded=_mt
PE_GA_DEFAULT_GENCOMPILERS_GNU=5.3 4.9
PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/18.07.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig
PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU
QT_SYSTEM_DIR=/usr/share/desktop-data
PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=82 71 53 49
PE_MPICH_TARGET_VAR_nvidia35=-lcudart
SHLVL=4
HOME=/global/homes/w/USER
PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI
JDK_HOME=/usr/lib64/jvm/java
CRAY_LIBSCI_VERSION=18.07.1
SLURM_PTY_PORT=62381
OSTYPE=linux
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos=16.0
LESS_ADVANCED_PREPROCESSOR=no
SLURM_LOCALID=0
PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.6
PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.7.3/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig
ALTD_PATH=/usr/common/software/altd/2.0
PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64
GREP_OPTIONS=--color=auto
SLURM_CLUSTER_NAME=edison
SLURM_JOB_CPUS_PER_NODE=48(x2)
PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=160
CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.14/include
XCURSOR_THEME=DMZ
PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos=86
LS_OPTIONS=-N --color=none -T 0
SLURM_JOB_GID=74291
SLURM_SUBMIT_HOST=mom2
WINDOWMANAGER=
PE_MPICH_DIR_CRAY_DEFAULT64=64
PRGENVMODULES=PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi
ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.1.3/libexec/atp_mrnet_commnode_wrapper
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=8.6
PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.6.0.3/lib64/pkgconfig
GCC_PATH=/opt/gcc/7.3.0
CRAYPE_NETWORK_TARGET=aries
SLURM_GTIDS=0
SLURM_JOB_PARTITION=regular
PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_mic_knl=7.1 5.3
PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0
BASH_ENV=/global/homes/w/USER/.bashrc
PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos=8.2 7.1 5.3 4.9
COLOR_LIGHT_GRAY=\e[0;37m
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=7.1 5.3 4.9
CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/18.07.1/GNU/7.1/x86_64
PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5
PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=16.0
PYTHONPATH=/opt/ovis/lib/python2.7/site-packages
PE_MPICH_NV_LIBS=
CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari/include
PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=8.2 7.1 5.3 4.9
MACHTYPE=x86_64-suse-linux
ALTD_SELECT_USERS=
LOGNAME=USER
COLOR_LIGHT_BLUE=\e[1;34m
PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=82 71 53 49
LESS=-M -I -R
PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL
PE_HDF5_PARALLEL_GENCOMPILERS_GNU=8.2 7.1 6.1 5.3 4.9
PE_HDF5_DEFAULT_GENCOMPS_GNU=
PE_MPICH_GENCOMPS_CRAY=86
DMAPP_ABORT_ON_ERROR=1
PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.6
CVS_RSH=ssh
PE_LIBSCI_OMP_REQUIRES=
PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=82 73 51 49
SLURM_STEP_NUM_TASKS=1
SLURM_JOB_ACCOUNT=m2621
PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH
TOOLMODULES=apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview
SSH_CONNECTION=172.73.67.84 53311 128.55.209.26 22
PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.6
XDG_DATA_DIRS=/usr/share
PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos=16.0
DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.7_2.2.116-6.0.7.1_8.11__g0dac9eb/include
PE_MPICH_DEFAULT_GENCOMPS_GNU=71 51 49
PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL
SLURM_JOB_NUM_NODES=2
PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL
PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/18.07.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig
MODULESHOME=/opt/cray/pe/modules/3.2.10.6
PE_FFTW2_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH
PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=8.2 7.1 5.3 4.9
PKG_CONFIG_PATH=/usr/common/software/darshan/3.1.4/lib/pkgconfig:/opt/cray/rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari/lib64/pkgconfig:/opt/cray/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari/lib64/pkgconfig:/opt/cray/xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari/lib64/pkgconfig:/opt/cray/gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari/lib64/pkgconfig:/opt/cray/dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.14/lib64/pkgconfig:/opt/cray/ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari/lib64/pkgconfig:/opt/cray/udreg/2.3.2-6.0.7.0_33.18__g5196236.ari/lib64/pkgconfig:/opt/cray/pe/craype/2.5.15/pkg-config:/opt/cray/pe/iobuf/2.0.8/lib/pkgconfig:/opt/cray/pe/fftw/2.1.5.9/lib/pkgconfig:/opt/cray/pe/atp/2.1.3/lib/pkgconfig
COLOR_WHITE=\e[1;37m
PE_MPICH_NV_LIBS_nvidia35=-lcudart
LESSOPEN=lessopen.sh %s
PELOCAL_PRGENV=true
PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.8.4.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig
COLOR_LIGHT_GREEN=\e[1;32m
LIBSCI_BASE_DIR=/opt/cray/pe/libsci/18.07.1
PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=160
SLURM_STEP_TASKS_PER_NODE=1
CRAY_NUM_COOKIES=2
PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@:PE_SCI_EXT_LIBPATH:PE_SCI_EXT_LIBNAME
PE_MPICH_NV_LIBS_nvidia60=-lcudart
PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=82 71 53 49
PE_TPSL_DEFAULT_GENCOMPS_INTEL_mic_knl=160
LIBSCI_VERSION=18.07.1
INFOPATH=/opt/gcc/7.3.0/snos/share/info
SLURM_STEP_NODELIST=nid01572
CRAY_COOKIES=4041998336,4042063872
XDG_RUNTIME_DIR=/run/user/74291
PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=16.0
CRAY_PRE_COMPILE_OPTS=-hnetwork=aries
CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari/include
CRAY_CPU_TARGET=sandybridge
PE_FFTW_DEFAULT_TARGET_broadwell=broadwell
NERSC_HOST=edison
PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=8.2 7.1 5.3 4.9
MPICH_GNI_ROUTING_MODE=ADAPTIVE_1
CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari/include
PE_PAPI_DEFAULT_ACCELL_FAMILY_LIBS=
PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=86
PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH
CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari/include
craype_already_loaded=0
PE_HDF5_PARALLEL_REQUIRED_PRODUCTS=PE_MPICH
PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=160
PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=7.1 6.1 5.1 4.9
PE_LIBSCI_GENCOMPS_GNU_x86_64=71 61 51 49
SLURM_CPU_BIND=quiet,mask_cpu:0xFFFFFFFFFFFF
PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=16.0
PE_FFTW_DEFAULT_TARGET_x86_64=x86_64
LESSCLOSE=lessclose.sh %s %s
ATP_HOME=/opt/cray/pe/atp/2.1.3
PE_HDF5_PARALLEL_GENCOMPS_GNU=
SLURM_MEM_PER_NODE=57344
SCRATCH=/scratch2/scratchdirs/USER
PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_skylake=16.0
ALTD_WORKDIR=/scratch1/scratchdirs/altdlogs
PE_FFTW_DEFAULT_TARGET_haswell=haswell
PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=16.0
PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.8/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig
G_BROKEN_FILENAMES=1
PE_GA_DEFAULT_GENCOMPS_GNU=53 49
PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos=7.1 5.3 4.9
PE_PAPI_DEFAULT_ACCEL_LIBS=
PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.8.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.6.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.6.1.3/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/mpt/7.7.3/gni/mpich-intel/16.0/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.10.2.0/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/hdf5/1.10.2.0/INTEL/16.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.8/INTEL/18.0/lib/pkgconfig
CRAY_LD_LIBRARY_PATH=/opt/cray/pe/hdf5-parallel/1.10.2.0/GNU/7.1/lib:/opt/cray/rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari/lib64:/opt/cray/alps/6.6.43-6.0.7.0_26.4__ga796da3.ari/lib64:/opt/cray/xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari/lib64:/opt/cray/dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari/lib64:/opt/cray/pe/pmi/5.0.14/lib64:/opt/cray/ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari/lib64:/opt/cray/udreg/2.3.2-6.0.7.0_33.18__g5196236.ari/lib64:/opt/cray/pe/libsci/18.07.1/GNU/7.1/x86_64/lib:/opt/cray/pe/mpt/7.7.3/gni/mpich-gnu/7.1/lib
PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64
COLORTERM=1
PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=86
PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=71 53 49
PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=160
PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64
JAVA_ROOT=/opt/java/jdk1.8.0_51
BASH_FUNC_module%%=() { eval `/opt/cray/pe/modules/3.2.10.6/bin/modulecmd bash $*`
}
+ lsb_release -a
LSB Version: n/a
Distributor ID: SUSE
Description: SUSE Linux Enterprise Server 12 SP3
Release: 12.3
Codename: n/a
+ uname -a
Linux nid01572 4.4.103-6.38_4.0.153-cray_ari_c #1 SMP Thu Nov 1 16:05:05 UTC 2018 (6ef8fef) x86_64 x86_64 x86_64 GNU/Linux
+ lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 48
On-line CPU(s) list: 0-47
Thread(s) per core: 2
Core(s) per socket: 12
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 62
Model name: Intel(R) Xeon(R) CPU E5-2695 v2 @ 2.40GHz
Stepping: 4
CPU MHz: 2401.000
CPU max MHz: 2401.0000
CPU min MHz: 1200.0000
BogoMIPS: 4799.59
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 30720K
NUMA node0 CPU(s): 0-11,24-35
NUMA node1 CPU(s): 12-23,36-47
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf eagerfpu pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm ida arat epb pln pts dtherm spec_ctrl kaiser tpr_shadow vnmi flexpriority ept vpid fsgsbase smep erms xsaveopt
+ cat /proc/meminfo
MemTotal: 65938820 kB
MemFree: 62827876 kB
MemAvailable: 62558036 kB
Buffers: 4988 kB
Cached: 268892 kB
SwapCached: 0 kB
Active: 163620 kB
Inactive: 229076 kB
Active(anon): 148272 kB
Inactive(anon): 205596 kB
Active(file): 15348 kB
Inactive(file): 23480 kB
Unevictable: 2576 kB
Mlocked: 2576 kB
SwapTotal: 0 kB
SwapFree: 0 kB
Dirty: 0 kB
Writeback: 0 kB
AnonPages: 121548 kB
Mapped: 57736 kB
Shmem: 234884 kB
Slab: 382700 kB
SReclaimable: 22840 kB
SUnreclaim: 359860 kB
KernelStack: 13584 kB
PageTables: 4656 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
WritebackTmp: 0 kB
CommitLimit: 32969408 kB
Committed_AS: 559876 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 0 kB
VmallocChunk: 0 kB
HardwareCorrupted: 0 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
HugePages_Surp: 0
Hugepagesize: 2048 kB
DirectMap4k: 12028 kB
DirectMap2M: 2048000 kB
DirectMap1G: 67108864 kB
+ inxi -F -c0
sc_env_info.sh: line 14: inxi: command not found
+ lsblk -a
NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINT
loop0 7:0 0 128K 0 loop /var/opt/cray/imps-distribution/squash
loop1 7:1 0 1.1M 0 loop /var/opt/cray/imps-distribution/squash
loop2 7:2 0 2.4G 1 loop /.rootfs_lower_ro
loop3 7:3 0 23.8G 1 loop /var/opt/cray/imps-image-binding/PE_x8
loop4 7:4 0 0 loop
loop5 7:5 0 0 loop
loop6 7:6 0 0 loop
loop7 7:7 0 0 loop
loop8 7:8 0 0 loop
loop9 7:9 0 0 loop
loop10 7:10 0 0 loop
loop11 7:11 0 0 loop
loop12 7:12 0 0 loop
loop13 7:13 0 0 loop
loop14 7:14 0 0 loop
loop15 7:15 0 0 loop
loop16 7:16 0 0 loop
loop17 7:17 0 0 loop
loop18 7:18 0 0 loop
loop19 7:19 0 0 loop
loop20 7:20 0 0 loop
loop21 7:21 0 0 loop
loop22 7:22 0 0 loop
loop23 7:23 0 0 loop
loop24 7:24 0 0 loop
loop25 7:25 0 0 loop
loop26 7:26 0 0 loop
loop27 7:27 0 0 loop
loop28 7:28 0 0 loop
loop29 7:29 0 0 loop
loop30 7:30 0 0 loop
loop31 7:31 0 0 loop
loop32 7:32 0 0 loop
loop33 7:33 0 0 loop
loop34 7:34 0 0 loop
loop35 7:35 0 0 loop
loop36 7:36 0 0 loop
loop37 7:37 0 0 loop
loop38 7:38 0 0 loop
loop39 7:39 0 0 loop
loop40 7:40 0 0 loop
loop41 7:41 0 0 loop
loop42 7:42 0 0 loop
loop43 7:43 0 0 loop
loop44 7:44 0 0 loop
loop45 7:45 0 0 loop
loop46 7:46 0 0 loop
loop47 7:47 0 0 loop
loop48 7:48 0 0 loop
loop49 7:49 0 0 loop
loop50 7:50 0 0 loop
loop51 7:51 0 0 loop
loop52 7:52 0 0 loop
loop53 7:53 0 0 loop
loop54 7:54 0 0 loop
loop55 7:55 0 0 loop
loop56 7:56 0 0 loop
loop57 7:57 0 0 loop
loop58 7:58 0 0 loop
loop59 7:59 0 0 loop
loop60 7:60 0 0 loop
loop61 7:61 0 0 loop
loop62 7:62 0 0 loop
loop63 7:63 0 0 loop
loop64 7:64 0 0 loop
loop65 7:65 0 0 loop
loop66 7:66 0 0 loop
loop67 7:67 0 0 loop
loop68 7:68 0 0 loop
loop69 7:69 0 0 loop
loop70 7:70 0 0 loop
loop71 7:71 0 0 loop
loop72 7:72 0 0 loop
loop73 7:73 0 0 loop
loop74 7:74 0 0 loop
loop75 7:75 0 0 loop
loop76 7:76 0 0 loop
loop77 7:77 0 0 loop
loop78 7:78 0 0 loop
loop79 7:79 0 0 loop
loop80 7:80 0 0 loop
loop81 7:81 0 0 loop
loop82 7:82 0 0 loop
loop83 7:83 0 0 loop
loop84 7:84 0 0 loop
loop85 7:85 0 0 loop
loop86 7:86 0 0 loop
loop87 7:87 0 0 loop
loop88 7:88 0 0 loop
loop89 7:89 0 0 loop
loop90 7:90 0 0 loop
loop91 7:91 0 0 loop
loop92 7:92 0 0 loop
loop93 7:93 0 0 loop
loop94 7:94 0 0 loop
loop95 7:95 0 0 loop
loop96 7:96 0 0 loop
loop97 7:97 0 0 loop
loop98 7:98 0 0 loop
loop99 7:99 0 0 loop
loop100 7:100 0 0 loop
loop101 7:101 0 0 loop
loop102 7:102 0 0 loop
loop103 7:103 0 0 loop
loop104 7:104 0 0 loop
loop105 7:105 0 0 loop
loop106 7:106 0 0 loop
loop107 7:107 0 0 loop
loop108 7:108 0 0 loop
loop109 7:109 0 0 loop
loop110 7:110 0 0 loop
loop111 7:111 0 0 loop
loop112 7:112 0 0 loop
loop113 7:113 0 0 loop
loop114 7:114 0 0 loop
loop115 7:115 0 0 loop
loop116 7:116 0 0 loop
loop117 7:117 0 0 loop
loop118 7:118 0 0 loop
loop119 7:119 0 0 loop
loop120 7:120 0 0 loop
loop121 7:121 0 0 loop
loop122 7:122 0 0 loop
loop123 7:123 0 0 loop
loop124 7:124 0 0 loop
loop125 7:125 0 0 loop
loop126 7:126 0 0 loop
loop127 7:127 0 0 loop
+ lsscsi -s
+ module list
++ /opt/cray/pe/modules/3.2.10.6/bin/modulecmd bash list
Currently Loaded Modulefiles:
1) modules/3.2.10.6
2) cray-mpich/7.7.3
3) gcc/7.3.0
4) craype-ivybridge
5) craype-network-aries
6) craype/2.5.15
7) cray-libsci/18.07.1
8) udreg/2.3.2-6.0.7.0_33.18__g5196236.ari
9) ugni/6.0.14.0-6.0.7.0_23.1__gea11d3d.ari
10) pmi/5.0.14
11) dmapp/7.1.1-6.0.7.0_34.3__g5a674e0.ari
12) gni-headers/5.0.12.0-6.0.7.0_24.1__g3b1768f.ari
13) xpmem/2.2.15-6.0.7.1_5.10__g7549d06.ari
14) job/2.2.3-6.0.7.0_44.1__g6c4e934.ari
15) dvs/2.7_2.2.116-6.0.7.1_8.11__g0dac9eb
16) alps/6.6.43-6.0.7.0_26.4__ga796da3.ari
17) rca/2.2.18-6.0.7.0_33.3__g2aa4f39.ari
18) atp/2.1.3
19) PrgEnv-gnu/6.0.4
20) cray-hdf5-parallel/1.10.2.0
21) java/jdk1.8.0_51
22) altd/2.0
23) darshan/3.1.4
24) Base-opts/2.4.135-6.0.7.0_38.1__g718f891.ari
+ eval
+ nvidia-smi
NVIDIA-SMI has failed because it couldn't communicate with the NVIDIA driver. Make sure that the latest NVIDIA driver is installed and running.
+ lshw -short -quiet -sanitize
+ cat
sc_env_info.sh: line 19: lshw: command not found
+ lspci
sc_env_info.sh: line 19: lspci: command not found
AE: No