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ChangeLog
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======================================================================
Originator: Bill Sacks
Date: 11-26-2019
Tag: cime5.8.15
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Modifications for UFS Global Mid-range Weather application
- Changes for nuopc mediator updates
- Fix clean build for CLM
- Fix dlnd for gnu
- Documentation updates for building pFUnit
User interface changes: none
PR summary: git log --oneline --first-parent [previous_tag]..master
67a54f588 Merge pull request #3315 from billsacks/pass_comp_lnd_to_build
8884a9e2f config_compilers had a duplicate entry for athena
4e556447e Merge pull request #3311 from billsacks/doc_pfunit_build
3c00449df Merge pull request #3312 from ESMCI/mvertens/update_nuopc_externals
7365a820b Merge pull request #3309 from ESMCI/fischer/T1850G1_fix
e67646129 Merge pull request #3306 from ESMCI/ufs-release
1c04f4453 Update location for obtaining pFUnit (#3300)
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/machines/config_compilers.xml
A config/ufs/config_archive.xml
A config/ufs/config_files.xml
A config/ufs/config_grids.xml
A config/ufs/config_grids_common.xml
A config/ufs/config_grids_mct.xml
A config/ufs/config_grids_nuopc.xml
A config/ufs/config_inputdata.xml
A config/ufs/machines/Depends.cray
A config/ufs/machines/Depends.gnu
A config/ufs/machines/Depends.intel
A config/ufs/machines/README
A config/ufs/machines/config_batch.xml
A config/ufs/machines/config_compilers.xml
A config/ufs/machines/config_machines.xml
A config/ufs/machines/config_pio.xml
A config/ufs/machines/config_workflow.xml
A config/ufs/machines/cylc_suite.rc.template
A config/ufs/machines/template.case.run
A config/ufs/machines/template.case.test
A config/ufs/machines/template.st_archive
A config/ufs/machines/userdefined_laptop_template/README.md
A config/ufs/machines/userdefined_laptop_template/config_compilers.xml
A config/ufs/machines/userdefined_laptop_template/config_machines.xml
A config/ufs/machines/userdefined_laptop_template/config_pes.xml
M doc/source/users_guide/unit_testing.rst
M scripts/Tools/Makefile
M scripts/create_test
M scripts/lib/CIME/build.py
M scripts/lib/CIME/utils.py
M scripts/tests/CTestConfig.cmake
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/nuopc/shr_carma_mod.F90
M src/share/nuopc/shr_fire_emis_mod.F90
M src/share/nuopc/shr_megan_mod.F90
M src/share/nuopc/shr_ndep_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 11-11-2019
Tag: cime5.8.14
Answer Changes: None, (except for X compsets with nuopc
Tests: scripts_regression_tests, ERIO.f09_g16.X.cheyenne_intel
Dependencies:
Brief Summary:
- Revert "initialize albdif and albdir in seq_flux_mct"
- Initialize albdif and albdir in seq_flux_mct.
- Clean up env_batch.
- Test too short.
- set mpilib for custom test.
- Shorten the cime developer tests.
- Update time of day string in ERI test.
- Shr code cleanup.
- Update for compatibility with latest CMEPS.
- Omit broken netcdf4 on cheyenne with mpt.
- Exclude .ref1 and .ref2 from TestStatus files and move get_test_status_files to a common place.
- Fix issue with e3sm field.
- Minor fix to e3sm_cime_mgmt to properly handle submodules.
- Refactor how run_cmd handles strings.
- ACME merge 2019-10-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
cad8477bb Merge pull request #3297 from ESMCI/revert-3296-master_seq_flux_init
5f7bfb6a1 Merge pull request #3296 from jedwards4b/master_seq_flux_init
96455e0d6 Merge pull request #3292 from ESMCI/jgfouca/cleanup_env_batch
73dddb262 test too short
ff5a4c07c set mpilib for custom test
de2f7c3bb Merge pull request #3289 from jedwards4b/shorten_cime_developer
62a77d1d5 Merge pull request #3288 from ESMCI/fischer/eri_test
0bd9a353e Merge pull request #3285 from jedwards4b/shr_code_cleanup
1529bac14 Merge pull request #3283 from ESMCI/nems_integration_fixed2
edb013cb7 Merge pull request #3284 from jedwards4b/ERIO_on_cheyenne
cafc94139 Merge pull request #3282 from jedwards4b/fix_get_test_status_files
0945a4760 Merge pull request #3277 from jedwards4b/demand_better
db4d8df17 Minor fix to e3sm_cime_mgmt to properly handle submodules
4d6798451 Merge pull request #3273 from ESMCI/jgfouca/run_cmd_str_refactor
bb9fc0a99 Merge pull request #3272 from ESMCI/jgfouca/branch-for-acme-split-2019-10-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M scripts/create_test
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_comp_mod.F90
M src/components/data_comps/docn/nuopc/docn_shr_mod.F90
M src/components/xcpl_comps/xlnd/nuopc/lnd_comp_nuopc.F90
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_aoflux_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_timemgr_mod.F90
M src/share/nuopc/glc_elevclass_mod.F90
M src/share/nuopc/seq_drydep_mod.F90
M src/share/streams/shr_strdata_mod.F90
M src/share/util/mct_mod.F90
M src/share/util/shr_const_mod.F90
M src/share/util/shr_flux_mod.F90
M src/share/util/shr_mct_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-24-2019
Tag: cime5.8.13
Answer Changes: None
Tests: scripts_regeression_tests
Dependencies:
Brief Summary:
- Add a raw xml option to the query_config interface.
- Add --only-job option to case.submit.
User interface changes:
- Add --xml to query_config.
- Add option --only-job to case.submit.
- Fix an issue with Lockedfile error when case.submit is used with the --no-batch flag.
- Change globally uniform SST mode from AQP11 to AQPCONST.
PR summary: git log --oneline --first-parent [previous_tag]..master
f22ebdafa Merge pull request #3268 from jedwards4b/add_xml_to_query_config
ab4d53999 Merge pull request #3267 from jedwards4b/no_workflow
4cd12246f Merge pull request #3265 from jedwards4b/fix_batch_lock_issue
a45130996 Merge pull request #3257 from ESMCI/whannah/add-AQPCONST-mode
Modified files: git diff --name-status [previous_tag]
M scripts/Tools/case.submit
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/utils.py
M scripts/query_config
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-15-2019
Tag: cime5.8.12
Answer Changes: None
Tests: ERS.T5_T5_mg37.QPC4, scripts_regression_tests
Dependencies:
Brief Summary:
- Add missing domain files for T5_T5_mg37 grid.
- Merge maint-5.6 to master 2019-11-10.
- Updates for cam testing updates.
- Fix nuopc esmf paths.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
7f1d48fe9 Merge pull request #3263 from ESMCI/fischer/T5_grid_fix
3468404c1 Merge pull request #3260 from ESMCI/fischer/maint-5.6_merge
7070d8a5c Merge pull request #3256 from ESMCI/fischer/cam_testing
4a9b008f2 fix nuopc esmf paths
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_workflow.xsd
M scripts/create_newcase
M scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/case/case.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/seq_flux_mct.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 10-01-2019
Tag: cime5.8.11
Answer Changes: None
Tests: scripts_regression_tests, Hand tested SMS_D_Vnuopc.f09_g17.X.cheyenne_intel
Dependencies:
Brief Summary:
- Correct the way esmf is built to avoid library mismatch.
- Update gnu compiler on cheyenne, bit for bit.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
693383167 Merge pull request #3252 from jedwards4b/nuopc_esmf_build_correction
fcc629127 Merge pull request #3253 from ESMCI/fischer/gnu_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M scripts/Tools/Makefile
======================================================================
======================================================================
Originator: Chris Fischer
Date: 9-26-2019
Tag: cime5.8.10
Answer Changes: None
Tests: scripts_regression_tests, tested with nuopc
Dependencies:
Brief Summary:
- Don't call mpi_bcast on null communicator.
- Fix nag compiler flags.
- Fix issue with workflow prior to run on master.
- Merge maint-5.6.
- Update esmf paths on cheyenne for nuopc.
- Fix issue in scripts_regression_tests.py.
- Fix issue 3232
- Update DROF(JRA) to MOM6 mapping file.
- acme split 2019-09-05 merge.
- Clean up some issues in scripts_regression_tests.py.
- Add /cluster/torque/bin to path on izumi.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
809bcb3b8 Merge pull request #3248 from jedwards4b/mct_null_comm_fix
2a2b9ecfe Merge pull request #3244 from ESMCI/fischer/cam_nag_fix
5f4f1c6da Merge pull request #3243 from jedwards4b/workflow_before_run_master
23409d7e9 Merge pull request #3241 from ESMCI/fischer/maint-5.6_09182019
47b630012 Merge pull request #3239 from jedwards4b/cheyenne_esmf_update
00d664666 fix issue in scripts_regression_tests.py
474dc5fc0 fix issue 3232
209b1e19b Merge pull request #3233 from alperaltuntas/update_TL319_t061
35bc87f4f Merge pull request #3230 from ESMCI/jgfouca/branch-for-acme-split-2019-09-05
d2f7157b8 Merge pull request #3227 from jedwards4b/srt_update
8bffca6d3 Merge pull request #3221 from billsacks/izumi_add_to_path
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_compsets.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/machines/config_pio.xml
M config/e3sm/tests.py
M config/xml_schemas/config_machines.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/machines.py
A scripts/lib/CIME/XML/stream.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/utils.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/buildnml
M src/components/data_comps/dice/cime_config/buildnml
M src/components/data_comps/dlnd/cime_config/buildnml
M src/components/data_comps/docn/cime_config/buildnml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/mct/docn_comp_mod.F90
M src/components/data_comps/docn/mct/docn_shr_mod.F90
M src/components/data_comps/drof/cime_config/buildnml
M src/components/data_comps/dwav/cime_config/buildnml
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/streams/shr_tInterp_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_scam_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-29-2019
Tag: cime5.8.9
Answer Changes: None
Tests: scripts_regression_tests --compiler nag, SMS_D_Ln9.f19_f19_mg17.QPC6.izumi_nag
Dependencies:
Brief Summary:
- Fix nag compiler for CAM.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
- 6026ca341 Merge pull request #3219 from ESMCI/fischer/nag
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.nag
======================================================================
======================================================================
Originator: Chris Fischer
Date: 8-26-2019
Tag: cime5.8.8
Answer Changes: None
Tests: scripts_regression_tests, aux_mom
Dependencies:
Brief Summary:
- Merge maint-5.6 branch.
- Add support for ne120pg3 using tx01.v3 mask.
- ACME merge 2019-08-20.
- Fix bad compset.
- Update ncpl and cpl_seq_option for mom6.
- Improve the config_compilers.xml schema.
- Overindented line fixed.
- ACME merge 2019-08-07.
- PIO2 update.
- Make sure output_root path is abspath.
- Use correct mask for ne16pg3 resolution.
- Changes to have TG compset with NUOPC cap work correctly.
- Point to new mapping files for r05 <-> f10 mapping.
- Fix some test fails.
- ACME merge 2019-07-22
- Remove test SMS.T42_T42.S when testing with nuopc driver.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
a9c9289f1 Merge branch 'maint-5.6'
44fd46a43 Merge pull request #3208 from ESMCI/fischer/ne120pg3_tx13
34e3dbe77 Merge pull request #3206 from ESMCI/jgfouca/branch-for-acme-split-2019-08-20
0b1c5aab9 Merge pull request #3203 from gold2718/fix_bad_compset
1c663d0e3 Merge pull request #3198 from alperaltuntas/update_mom6_ncpl
74b5913c4 Merge pull request #3196 from jedwards4b/config_compiler_schema_improvement
b0d5c1537 Merge pull request #3197 from jedwards4b/fix_indentation
c2433ef3f Merge pull request #3195 from ESMCI/jgfouca/branch-for-acme-split-2019-08-07
74afc1fc1 Merge pull request #3194 from jedwards4b/pio2_update
97725f090 Merge pull request #3193 from jedwards4b/fix_output_root
d1efcdc44 Merge pull request #3190 from gold2718/fix_ne16pg3_mask
f1a4a59cd Merge pull request #3187 from ESMCI/mvertens/nuopc-cism-changes
f2744838b Merge pull request #3186 from billsacks/fix_r05_f10_maps
86f60dfd7 Merge pull request #3183 from ESMCI/jgfouca/fix_test_fails
b6d24eab7 Merge pull request #3181 from ESMCI/jgfouca/branch-for-acme-split-2019-07-22
d7f56ac8b Merge pull request #3178 from jedwards4b/nuopc_interface_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M config/e3sm/tests.py
M scripts/Tools/Makefile
M scripts/Tools/mkDepends
M scripts/Tools/preview_run
M scripts/climate_reproducibility/README.md
D scripts/climate_reproducibility/requirements.txt
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/pgn.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/check_lockedfiles.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_domain_mct.F90
M src/drivers/moab/main/cime_comp_mod.F90
M src/externals/pio2/.travis.yml
M src/externals/pio2/configure.ac
A src/externals/pio2/doc/source/netcdf_integration.txt
M src/externals/pio2/doc/source/users_guide.txt
M src/externals/pio2/examples/Makefile.am
M src/externals/pio2/examples/c/Makefile.am
M src/externals/pio2/examples/c/darray_async.c
M src/externals/pio2/examples/c/darray_no_async.c
M src/externals/pio2/examples/c/example1.c
M src/externals/pio2/examples/c/examplePio.c
A src/externals/pio2/examples/f03/Makefile.am
A src/externals/pio2/examples/f03/run_tests.sh
M src/externals/pio2/src/Makefile.am
M src/externals/pio2/src/clib/Makefile.am
M src/externals/pio2/src/clib/bget.c
M src/externals/pio2/src/clib/pio.h
M src/externals/pio2/src/clib/pio_darray.c
M src/externals/pio2/src/clib/pio_darray_int.c
A src/externals/pio2/src/clib/pio_error.h
M src/externals/pio2/src/clib/pio_file.c
M src/externals/pio2/src/clib/pio_get_nc.c
M src/externals/pio2/src/clib/pio_get_vard.c
M src/externals/pio2/src/clib/pio_getput_int.c
M src/externals/pio2/src/clib/pio_internal.h
M src/externals/pio2/src/clib/pio_lists.c
M src/externals/pio2/src/clib/pio_msg.c
M src/externals/pio2/src/clib/pio_nc.c
M src/externals/pio2/src/clib/pio_nc4.c
M src/externals/pio2/src/clib/pio_put_nc.c
M src/externals/pio2/src/clib/pio_put_vard.c
M src/externals/pio2/src/clib/pio_rearrange.c
M src/externals/pio2/src/clib/pio_spmd.c
M src/externals/pio2/src/clib/pioc.c
M src/externals/pio2/src/clib/pioc_sc.c
M src/externals/pio2/src/clib/pioc_support.c
M src/externals/pio2/src/flib/CMakeLists.txt
M src/externals/pio2/src/flib/Makefile.am
A src/externals/pio2/src/flib/ncint_mod.F90
M src/externals/pio2/src/flib/pio.F90
M src/externals/pio2/src/flib/pio_nf.F90
M src/externals/pio2/src/flib/pio_support.F90
M src/externals/pio2/src/flib/piodarray.F90.in
M src/externals/pio2/src/flib/piolib_mod.F90
M src/externals/pio2/src/flib/pionfatt_mod.F90.in
M src/externals/pio2/src/flib/pionfput_mod.F90.in
A src/externals/pio2/src/ncint/Makefile.am
A src/externals/pio2/src/ncint/nc_get_vard.c
A src/externals/pio2/src/ncint/nc_put_vard.c
A src/externals/pio2/src/ncint/ncint_pio.c
A src/externals/pio2/src/ncint/ncintdispatch.c
A src/externals/pio2/src/ncint/ncintdispatch.h
M src/externals/pio2/tests/Makefile.am
M src/externals/pio2/tests/cunit/Makefile.am
M src/externals/pio2/tests/cunit/pio_tests.h
M src/externals/pio2/tests/cunit/test_async_mpi.c
M src/externals/pio2/tests/cunit/test_async_multicomp.c
M src/externals/pio2/tests/cunit/test_async_perf.c
M src/externals/pio2/tests/cunit/test_common.c
M src/externals/pio2/tests/cunit/test_darray.c
M src/externals/pio2/tests/cunit/test_darray_async.c
M src/externals/pio2/tests/cunit/test_darray_async_many.c
M src/externals/pio2/tests/cunit/test_darray_async_simple.c
M src/externals/pio2/tests/cunit/test_perf2.c
M src/externals/pio2/tests/cunit/test_rearr.c
A src/externals/pio2/tests/fncint/Makefile.am
A src/externals/pio2/tests/fncint/ftst_pio.f90
A src/externals/pio2/tests/fncint/ftst_pio_orig.f90
A src/externals/pio2/tests/fncint/run_tests.sh
A src/externals/pio2/tests/fncint/tst_c_pio.c
M src/externals/pio2/tests/general/Makefile.am
M src/externals/pio2/tests/general/ncdf_get_put.F90.in
M src/externals/pio2/tests/general/ncdf_inq.F90.in
M src/externals/pio2/tests/general/pio_decomp_fillval.F90.in
M src/externals/pio2/tests/general/pio_decomp_frame_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_1d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_2d.F90.in
M src/externals/pio2/tests/general/pio_decomp_tests_3d.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests2.F90.in
M src/externals/pio2/tests/general/pio_iosystem_tests3.F90.in
M src/externals/pio2/tests/general/pio_rearr.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts.F90.in
M src/externals/pio2/tests/general/pio_rearr_opts2.F90.in
M src/externals/pio2/tests/general/util/pio_tutil.F90
A src/externals/pio2/tests/ncint/Makefile.am
A src/externals/pio2/tests/ncint/run_tests.sh
A src/externals/pio2/tests/ncint/tst_pio_udf.c
M src/externals/pio2/tests/performance/Makefile.am
M src/externals/pio2/tests/unit/Makefile.am
M src/externals/pio2/tests/unit/basic_tests.F90
M src/externals/pio2/tests/unit/driver.F90
M src/externals/pio2/tests/unit/ncdf_tests.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-19-209
Tag: cime5.8.7
Answer Changes: Climate changing for CAM ne120, ne120pg3, ne0CONUS grids
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix SE to gx1v7 domain and mapping files.
- Updates and fixes for MOM6 in cime.
- Maint 5.6 merge.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
6efe21745 Merge pull request #3177 from ESMCI/fischer/SE_gx1v7MaskFix
764ef08a0 Merge pull request #3156 from ESMCI/nuopc-cmeps-os
7a5d60356 Merge pull request #3174 from jedwards4b/maint-5.6-merge
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
A config/cesm/machines/config_workflow.xml
A config/cesm/machines/cylc_suite.rc.template
M config/config_headers.xml
M config/e3sm/config_files.xml
M config/e3sm/machines/config_batch.xml
A config/e3sm/machines/config_workflow.xml
M config/xml_schemas/config_batch.xsd
A config/xml_schemas/config_workflow.xsd
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
A scripts/Tools/generate_cylc_workflow.py
M scripts/Tools/mkDepends
M scripts/Tools/preview_run
M scripts/create_clone
M scripts/create_newcase
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_specific.py
A scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/generic_xml.py
A scripts/lib/CIME/XML/workflow.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_clone.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/get_timing.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/share/util/shr_file_mod.F90
======================================================================
Originator: Chris Fischer
Date: 7-16-2019
Tag: cime5.8.6
Answer Changes: None
Tests: scripts_regression_tests, SMS_Ld1.f19_f19_mg17.FXSD.cheyenne_intel.cam-outfrq1d
Dependencies:
Brief Summary:
- Add back ESMF modules on cheyenne.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
07f0945e6 Merge pull request #3172 from ESMCI/fischer/fix_esmfmodules
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 7-12-2019
Tag: cime5.8.5
Answer Changes: bit for bit
Tests: scripts_regression_tests on izumi, SMS_Ln9.ne0CONUSne30x8_ne0CONUSne30x8_mg17.F2000climo
Dependencies:
Brief Summary:
- Add support to run SE CONUS grid with mt12 mask.
- ne120 SE grid updates.
- Changes needed for nuopc/mct mom6 validation.
- Case insensitive user_nl.
- ACME merge 2019-06-25.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
ba5ce7f68 Merge pull request #3167 from ESMCI/fischer/SE_conusmt12
0463588af Merge pull request #3165 from ESMCI/fischer/SE_grids
910960cfe Merge pull request #3166 from ESMCI/mvertens/mom6_validation
603fcc6be Merge pull request #3157 from jedwards4b/caseinsensitive_usernl
53527bce7 Merge pull request #3154 from ESMCI/jgfouca/branch-for-acme-split-2019-06-25
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/config_grids_nuopc.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/namelist.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/seq_flux_mct.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/util/shr_flux_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-24-2019
Tag: cime5.8.4
Answer Changes: None
Tests: scripts_regression_tests, code checker
Dependencies:
Brief Summary:
- Update Theia job scheduler to Slurm.
- Fix liner error.
- Update to the latest pio2 development version 2.4.4, set pio2 as default.
- Add the external files in the nuopc directory to code_checker.
- Require ids in namelist definition files to be lower case.
- Build groups need to be hashable for cesm.
- Move an Include statement in the Makefile.
- ACME merge 2019-06-10
- Change nodefail test to allow for nuopc file name difference from mct.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
8f0e3d3 Merge pull request #3150 from ESMCI/theia_to_slurm
5c379f8 fix linker error
a170130 Merge pull request #3148 from jedwards4b/pio2_update
38b5153 Merge pull request #3147 from jedwards4b/nuopc_code_checker
3c28a33 Merge pull request #3145 from jedwards4b/downcase_namelist_definition
4567384 Merge pull request #3146 from ESMCI/jgfouca/fix_test_sched_cesm
fc598a7 Merge pull request #3143 from jedwards4b/incflagfix
a3d36d3 Merge pull request #3139 from ESMCI/jgfouca/branch-for-acme-split-2019-06-10
b0a7b75 Merge pull request #3141 from jedwards4b/nuopc_nodefail_fix
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/Depends.babbageKnc
M config/cesm/machines/Depends.cray
M config/cesm/machines/Depends.intelmic
M config/cesm/machines/Depends.intelmic14
M config/cesm/machines/Depends.nag
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
D config/e3sm/machines/Depends.cetus
M config/e3sm/machines/Depends.cray
A config/e3sm/machines/Depends.cray.cmake
A config/e3sm/machines/Depends.gnu.cmake
A config/e3sm/machines/Depends.ibm
A config/e3sm/machines/Depends.ibm.cmake
A config/e3sm/machines/Depends.intel.cmake
D config/e3sm/machines/Depends.mira
M config/e3sm/machines/Depends.nag
A config/e3sm/machines/Depends.nag.cmake
A config/e3sm/machines/Depends.summit.cmake
D config/e3sm/machines/Depends.summit.ibm
M config/e3sm/machines/Depends.summit.pgiacc
A config/e3sm/machines/Depends.summit.pgiacc.cmake
D config/e3sm/machines/Depends.summitdev.ibm
M config/e3sm/machines/Depends.summitdev.pgiacc
A config/e3sm/machines/Depends.summitdev.pgiacc.cmake
A config/e3sm/machines/Depends.theta.intel.cmake
D config/e3sm/machines/Depends.titan.cray
D config/e3sm/machines/Depends.titan.intel
D config/e3sm/machines/Depends.titan.pgi
D config/e3sm/machines/Depends.titan.pgiacc
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
A config/e3sm/machines/syslog.compy
D config/e3sm/machines/syslog.edison
M config/e3sm/tests.py
M scripts/Tools/Makefile
A scripts/Tools/bld_diff
M scripts/Tools/get_standard_makefile_args
M scripts/create_test
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macroconditiontree.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/get_tests.py
M scripts/tests/scripts_regression_tests.py
M src/CMake/CIME_initial_setup.cmake
A src/CMake/FindPETSc.cmake
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/externals/pio2/.gitignore
A src/externals/pio2/.travis.yml
M src/externals/pio2/CMakeLists.txt
A src/externals/pio2/COPYRIGHT
M src/externals/pio2/Makefile.am
M src/externals/pio2/README.md
M src/externals/pio2/cmake_config.h.in
M src/externals/pio2/configure.ac
M src/externals/pio2/ctest/CTestEnvironment-nwscla.cmake
M src/externals/pio2/ctest/runcdash-nwscla-gnu.sh
M src/externals/pio2/ctest/runcdash-nwscla-intel.sh
M src/externals/pio2/ctest/runcdash-nwscla-pgi.sh
M src/externals/pio2/doc/Doxyfile.in
M src/externals/pio2/doc/DoxygenLayout.xml
A src/externals/pio2/doc/Makefile.am
A src/externals/pio2/doc/images/I_O_on_Few.png
A src/externals/pio2/doc/images/I_O_on_Many_Async.png
A src/externals/pio2/doc/images/I_O_on_Many_Intracomm.png
A src/externals/pio2/doc/images/Makefile.am
A src/externals/pio2/doc/images/PIO_Async.png
A src/externals/pio2/doc/images/PIO_Decomposition.png
A src/externals/pio2/doc/images/PIO_Intracomm1.png
A src/externals/pio2/doc/images/PIO_Library_Architecture1.jpg
M src/externals/pio2/doc/source/Decomp.txt
M src/externals/pio2/doc/source/Error.txt
M src/externals/pio2/doc/source/Examples.txt
D src/externals/pio2/doc/source/GettingStarted.txt
M src/externals/pio2/doc/source/Installing.txt
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======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-7-2019
Tag: cime5.8.3
Answer Changes: [None, Round Off, Climate Changing]
Tests: scripts_regression_tests.py with CIME_DRIVER=nuopc,
scripts_regression_tests
Dependencies:
Brief Summary:
- Add logic to control activation of glcshelf_c2_ice.
- Fix nuopc build, update for stamepede esmf lib.
- Fixes for nuopc scripts_regressions_tests.
- Merge branch master.
- Merge branch master.
- Merge acme split 2019-5-28
- Remove the nuopc driver and mediator to a separate repository https://github.com/ESCOMP/CMEPS.git
- New documentation explaining how to invoked the --user-mods-dir option to create_newcase.
- Update cheyenne intel compiler, add DOI.
- Provide default for the number of create_test parallel jobs.
- Use truncated division operator in SEQ SystemTest for py2+3 compatibility.
- Merge maint-5.6.
- Merge acme split 2019-05-14.
- Fix typo.
- Send the case2 TestStatus.log updates to the case1 file.
- Small upgrade to e3sm_cime_mgmt.
- Optional arguments run_exe and run_misc_suffix not required.
- Fix ConfigParser fails with some saved submit_options.
- Allow custom run_exe and run_misc_suffix.
- Nuopc cmeps.
- Add NLDAS2 datm forcing option.
- Change DATM_CLMNCEP_YR_ALIGN for present-day compsets.
- Merge acme split 2019-04-29
- Fix for edison.
- Update modules cheyenne.
- Poperly link nag f90.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
9f39361 Add logic to control activation of glcshelf_c2_ice (#3131)
f383ae6 Merge pull request #3137 from jedwards4b/build_fix
caa0dcf fixes for nuopc scripts_regressions_tests to work
a8bf363 Merge branch 'master' of https://github.com/ESMCI/cime
1b211e3 Merge branch 'master' of https://github.com/ESMCI/cime