diff --git a/poetry.lock b/poetry.lock index 6ee0f08..e5763c2 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,13 +1,27 @@ [[package]] name = "absl-py" -version = "1.0.0" +version = "1.4.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "anyio" +version = "3.6.2" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "dev" +optional = false +python-versions = ">=3.6.2" + [package.dependencies] -six = "*" +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] +trio = ["trio (>=0.16,<0.22)"] [[package]] name = "appnope" @@ -27,7 +41,6 @@ python-versions = ">=3.6" [package.dependencies] argon2-cffi-bindings = "*" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] @@ -49,6 +62,17 @@ cffi = ">=1.0.1" dev = ["pytest", "cogapp", "pre-commit", "wheel"] tests = ["pytest"] +[[package]] +name = "arrow" +version = "1.2.3" +description = "Better dates & times for Python" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +python-dateutil = ">=2.7.0" + [[package]] name = "astor" version = "0.8.1" @@ -58,26 +82,34 @@ optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" [[package]] -name = "atomicwrites" -version = "1.4.0" -description = "Atomic file writes." +name = "asttokens" +version = "2.2.1" +description = "Annotate AST trees with source code positions" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = "*" + +[package.dependencies] +six = "*" + +[package.extras] +test = ["astroid", "pytest"] [[package]] name = "attrs" -version = "21.4.0" +version = "22.2.0" description = "Classes Without Boilerplate" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +cov = ["attrs", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"] +dev = ["attrs"] +docs = ["furo", "sphinx", "myst-parser", "zope.interface", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"] +tests = ["attrs", "zope.interface"] +tests-no-zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"] +tests_no_zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"] [[package]] name = "backcall" @@ -89,7 +121,7 @@ python-versions = "*" [[package]] name = "beautifulsoup4" -version = "4.11.1" +version = "4.11.2" description = "Screen-scraping library" category = "dev" optional = false @@ -104,34 +136,30 @@ lxml = ["lxml"] [[package]] name = "black" -version = "21.12b0" +version = "23.1.0" description = "The uncompromising code formatter." category = "dev" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.7" [package.dependencies] -click = ">=7.1.2" +click = ">=8.0.0" mypy-extensions = ">=0.4.3" -pathspec = ">=0.9.0,<1" +packaging = ">=22.0" +pathspec = ">=0.9.0" platformdirs = ">=2" -tomli = ">=0.2.6,<2.0.0" -typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""} -typing-extensions = [ - {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}, - {version = "!=3.10.0.1", markers = "python_version >= \"3.10\""}, -] +tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} +typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} [package.extras] colorama = ["colorama (>=0.4.3)"] d = ["aiohttp (>=3.7.4)"] jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] -python2 = ["typed-ast (>=1.4.3)"] uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "bleach" -version = "5.0.0" +version = "6.0.0" description = "An easy safelist-based HTML-sanitizing tool." category = "dev" optional = false @@ -142,12 +170,11 @@ six = ">=1.9.0" webencodings = "*" [package.extras] -css = ["tinycss2 (>=1.1.0)"] -dev = ["pip-tools (==6.5.1)", "pytest (==7.1.1)", "flake8 (==4.0.1)", "tox (==3.24.5)", "sphinx (==4.3.2)", "twine (==4.0.0)", "wheel (==0.37.1)", "hashin (==0.17.0)", "black (==22.3.0)", "mypy (==0.942)"] +css = ["tinycss2 (>=1.1.0,<1.2)"] [[package]] name = "cffi" -version = "1.15.0" +version = "1.15.1" description = "Foreign Function Interface for Python calling C code." category = "dev" optional = false @@ -166,7 +193,7 @@ python-versions = ">=3.6.1" [[package]] name = "chex" -version = "0.1.2" +version = "0.1.5" description = "Chex: Testing made fun, in JAX!" category = "main" optional = false @@ -182,7 +209,7 @@ toolz = ">=0.9.0" [[package]] name = "click" -version = "8.1.2" +version = "8.1.3" description = "Composable command line interface toolkit" category = "dev" optional = false @@ -190,19 +217,50 @@ python-versions = ">=3.7" [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" -version = "0.4.4" +version = "0.4.6" description = "Cross-platform colored terminal text." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" + +[[package]] +name = "comm" +version = "0.1.2" +description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +traitlets = ">=5.3" + +[package.extras] +test = ["pytest"] + +[[package]] +name = "contourpy" +version = "1.0.7" +description = "Python library for calculating contours of 2D quadrilateral grids" +category = "dev" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = ">=1.16" + +[package.extras] +bokeh = ["bokeh", "chromedriver", "selenium"] +docs = ["furo", "sphinx-copybutton"] +mypy = ["contourpy", "docutils-stubs", "mypy (==0.991)", "types-pillow"] +test = ["matplotlib", "pillow", "pytest"] +test-no-images = ["pytest"] [[package]] name = "coverage" -version = "6.4.1" +version = "7.1.0" description = "Code coverage measurement for Python" category = "dev" optional = false @@ -224,7 +282,7 @@ python-versions = ">=3.6" [[package]] name = "debugpy" -version = "1.6.0" +version = "1.6.6" description = "An implementation of the Debug Adapter Protocol for Python" category = "dev" optional = false @@ -248,18 +306,18 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "dill" -version = "0.3.4" +version = "0.3.6" description = "serialize all of python" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*" +python-versions = ">=3.7" [package.extras] graph = ["objgraph (>=1.7.2)"] [[package]] name = "distlib" -version = "0.3.4" +version = "0.3.6" description = "Distribution utilities" category = "dev" optional = false @@ -267,27 +325,22 @@ python-versions = "*" [[package]] name = "dm-tree" -version = "0.1.7" +version = "0.1.8" description = "Tree is a library for working with nested data structures." category = "main" optional = false python-versions = "*" [[package]] -name = "entrypoints" -version = "0.4" -description = "Discover and load entry points from installed packages." +name = "exceptiongroup" +version = "1.1.0" +description = "Backport of PEP 654 (exception groups)" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" -[[package]] -name = "eradicate" -version = "2.1.0" -description = "Removes commented-out code." -category = "dev" -optional = false -python-versions = "*" +[package.extras] +test = ["pytest (>=6)"] [[package]] name = "execnet" @@ -300,9 +353,20 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] testing = ["pre-commit"] +[[package]] +name = "executing" +version = "1.2.0" +description = "Get the currently executing AST node of a frame, and other information" +category = "dev" +optional = false +python-versions = "*" + +[package.extras] +tests = ["asttokens", "pytest", "littleutils", "rich"] + [[package]] name = "fastjsonschema" -version = "2.15.3" +version = "2.16.2" description = "Fastest Python implementation of JSON schema" category = "dev" optional = false @@ -313,73 +377,61 @@ devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benc [[package]] name = "filelock" -version = "3.6.0" +version = "3.9.0" description = "A platform independent file lock." category = "dev" optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"] -testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-cov", "pytest-timeout (>=1.4.2)"] +docs = ["furo (>=2022.12.7)", "sphinx-autodoc-typehints (>=1.19.5)", "sphinx (>=5.3)"] +testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)", "pytest (>=7.2)"] [[package]] name = "flake8" -version = "4.0.1" +version = "6.0.0" description = "the modular source code checker: pep8 pyflakes and co" category = "dev" optional = false -python-versions = ">=3.6" - -[package.dependencies] -importlib-metadata = {version = "<4.3", markers = "python_version < \"3.8\""} -mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.8.0,<2.9.0" -pyflakes = ">=2.4.0,<2.5.0" - -[[package]] -name = "flake8-broken-line" -version = "0.4.0" -description = "Flake8 plugin to forbid backslashes for line breaks" -category = "dev" -optional = false -python-versions = ">=3.6,<4.0" +python-versions = ">=3.8.1" [package.dependencies] -flake8 = ">=3.5,<5" +mccabe = ">=0.7.0,<0.8.0" +pycodestyle = ">=2.10.0,<2.11.0" +pyflakes = ">=3.0.0,<3.1.0" [[package]] name = "flake8-bugbear" -version = "22.3.23" +version = "23.1.20" description = "A plugin for flake8 finding likely bugs and design problems in your program. Contains warnings that don't belong in pyflakes and pycodestyle." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] attrs = ">=19.2.0" flake8 = ">=3.0.0" [package.extras] -dev = ["coverage", "hypothesis", "hypothesmith (>=0.2)", "pre-commit"] +dev = ["tox", "coverage", "hypothesis", "hypothesmith (>=0.2)", "pre-commit", "pytest"] [[package]] name = "flake8-builtins" -version = "1.5.3" +version = "2.1.0" description = "Check for python builtins being used as variables or parameters." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] flake8 = "*" [package.extras] -test = ["coverage", "coveralls", "mock", "pytest", "pytest-cov"] +test = ["pytest"] [[package]] name = "flake8-comprehensions" -version = "3.8.0" +version = "3.10.1" description = "A flake8 plugin to help you write better list/set/dict comprehensions." category = "dev" optional = false @@ -387,59 +439,44 @@ python-versions = ">=3.7" [package.dependencies] flake8 = ">=3.0,<3.2.0 || >3.2.0" -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "flake8-docstrings" -version = "1.6.0" +version = "1.7.0" description = "Extension for flake8 which uses pydocstyle to check docstrings" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] flake8 = ">=3" pydocstyle = ">=2.1" -[[package]] -name = "flake8-eradicate" -version = "1.2.0" -description = "Flake8 plugin to find commented out code" -category = "dev" -optional = false -python-versions = ">=3.6,<4.0" - -[package.dependencies] -attrs = "*" -eradicate = ">=2.0,<3.0" -flake8 = ">=3.5,<5" - [[package]] name = "flake8-isort" -version = "4.1.1" +version = "6.0.0" description = "flake8 plugin that integrates isort ." category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] -flake8 = ">=3.2.1,<5" -isort = ">=4.3.5,<6" -testfixtures = ">=6.8.0,<7" +flake8 = "*" +isort = ">=5.0.0,<6" [package.extras] -test = ["pytest-cov"] +test = ["pytest"] [[package]] name = "flake8-markdown" -version = "0.3.0" +version = "0.4.0" description = "Lints Python code blocks in Markdown files using flake8" category = "dev" optional = false -python-versions = ">=3.6,<4.0" +python-versions = ">=3.7" [package.dependencies] -flake8 = ">=3.0,<5.0" +flake8 = ">=5.0.0" [[package]] name = "flake8-plugin-utils" @@ -449,29 +486,17 @@ category = "dev" optional = false python-versions = ">=3.6,<4.0" -[[package]] -name = "flake8-polyfill" -version = "1.0.2" -description = "Polyfill package for Flake8 plugins" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -flake8 = "*" - [[package]] name = "flake8-print" -version = "4.0.0" +version = "5.0.0" description = "print statement checker plugin for flake8" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] flake8 = ">=3.0" pycodestyle = "*" -six = "*" [[package]] name = "flake8-pytest-style" @@ -486,7 +511,7 @@ flake8-plugin-utils = ">=1.3.2,<2.0.0" [[package]] name = "flake8-simplify" -version = "0.14.6" +version = "0.19.3" description = "flake8 plugin which checks for code that can be simplified" category = "dev" optional = false @@ -495,11 +520,10 @@ python-versions = ">=3.6.1" [package.dependencies] astor = ">=0.1" flake8 = ">=3.7" -importlib-metadata = {version = ">=0.9", markers = "python_version < \"3.8\""} [[package]] name = "flake8-tidy-imports" -version = "4.6.0" +version = "4.8.0" description = "A flake8 plugin that helps you write tidier imports." category = "dev" optional = false @@ -507,40 +531,40 @@ python-versions = ">=3.7" [package.dependencies] flake8 = ">=3.8.0" -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - -[[package]] -name = "flatbuffers" -version = "2.0" -description = "The FlatBuffers serialization format for Python" -category = "main" -optional = false -python-versions = "*" [[package]] name = "fonttools" -version = "4.32.0" +version = "4.38.0" description = "Tools to manipulate font files" category = "dev" optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] graphite = ["lz4 (>=1.7.4.2)"] interpolatable = ["scipy", "munkres"] lxml = ["lxml (>=4.0,<5)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] +repacker = ["uharfbuzz (>=0.23.0)"] symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] unicode = ["unicodedata2 (>=14.0.0)"] woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] +[[package]] +name = "fqdn" +version = "1.5.1" +description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4" + [[package]] name = "identify" -version = "2.4.12" +version = "2.5.17" description = "File identification library for Python" category = "dev" optional = false @@ -549,25 +573,33 @@ python-versions = ">=3.7" [package.extras] license = ["ukkonen"] +[[package]] +name = "idna" +version = "3.4" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "importlib-metadata" -version = "4.2.0" +version = "6.0.0" description = "Read metadata from Python packages" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] -typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"] +perf = ["ipython"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" -version = "5.7.0" +version = "5.10.2" description = "Read resources from Python packages" category = "dev" optional = false @@ -577,47 +609,54 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"] [[package]] name = "iniconfig" -version = "1.1.1" -description = "iniconfig: brain-dead simple config-ini parsing" +version = "2.0.0" +description = "brain-dead simple config-ini parsing" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [[package]] name = "ipykernel" -version = "6.13.0" +version = "6.21.1" description = "IPython Kernel for Jupyter" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] appnope = {version = "*", markers = "platform_system == \"Darwin\""} -debugpy = ">=1.0" +comm = ">=0.1.1" +debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" +jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" psutil = "*" +pyzmq = ">=17" tornado = ">=6.1" -traitlets = ">=5.1.0" +traitlets = ">=5.4.0" [package.extras] -test = ["pytest (>=6.0)", "pytest-cov", "flaky", "ipyparallel", "pre-commit", "pytest-timeout"] +cov = ["coverage", "curio", "matplotlib", "pytest-cov", "trio"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"] +pyqt5 = ["pyqt5"] +pyside6 = ["pyside6"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest-asyncio", "pytest-cov", "pytest-timeout", "pytest (>=7.0)"] [[package]] name = "ipython" -version = "7.32.0" +version = "8.9.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] appnope = {version = "*", markers = "sys_platform == \"darwin\""} @@ -628,20 +667,23 @@ jedi = ">=0.16" matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" -prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" -pygments = "*" -traitlets = ">=4.2" +prompt-toolkit = ">=3.0.30,<3.1.0" +pygments = ">=2.4.0" +stack-data = "*" +traitlets = ">=5" [package.extras] -all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"] -doc = ["Sphinx (>=1.3)"] +all = ["black", "ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.20)", "pandas", "trio"] +black = ["black"] +doc = ["ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath"] kernel = ["ipykernel"] nbconvert = ["nbconvert"] nbformat = ["nbformat"] -notebook = ["notebook", "ipywidgets"] +notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] -test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] +test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] +test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.20)", "pandas", "trio"] [[package]] name = "ipython-genutils" @@ -653,79 +695,85 @@ python-versions = "*" [[package]] name = "ipywidgets" -version = "7.7.0" -description = "IPython HTML widgets for Jupyter" +version = "8.0.4" +description = "Jupyter interactive widgets" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] ipykernel = ">=4.5.1" -ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} -ipython-genutils = ">=0.2.0,<0.3.0" -jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} -nbformat = ">=4.2.0" +ipython = ">=6.1.0" +jupyterlab-widgets = ">=3.0,<4.0" traitlets = ">=4.3.1" -widgetsnbextension = ">=3.6.0,<3.7.0" +widgetsnbextension = ">=4.0,<5.0" [package.extras] -test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] +test = ["jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"] + +[[package]] +name = "isoduration" +version = "20.11.0" +description = "Operations with ISO 8601 durations" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +arrow = ">=0.15.0" [[package]] name = "isort" -version = "5.10.1" +version = "5.12.0" description = "A Python utility / library to sort Python imports." category = "dev" optional = false -python-versions = ">=3.6.1,<4.0" +python-versions = ">=3.8.0" [package.extras] -pipfile_deprecated_finder = ["pipreqs", "requirementslib"] -requirements_deprecated_finder = ["pipreqs", "pip-api"] -colors = ["colorama (>=0.4.3,<0.5.0)"] +colors = ["colorama (>=0.4.3)"] +requirements-deprecated-finder = ["pip-api", "pipreqs"] +pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"] plugins = ["setuptools"] [[package]] name = "jax" -version = "0.3.5" +version = "0.4.2" description = "Differentiate, compile, and transform Numpy code." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -absl-py = "*" -numpy = ">=1.19" +numpy = ">=1.20" opt_einsum = "*" -scipy = ">=1.2.1" -typing_extensions = "*" +scipy = ">=1.5" [package.extras] -ci = ["jaxlib (==0.3.2)"] -cpu = ["jaxlib (==0.3.5)"] -cuda = ["jaxlib (==0.3.5+cuda11.cudnn82)"] -cuda11_cudnn805 = ["jaxlib (==0.3.5+cuda11.cudnn805)"] -cuda11_cudnn82 = ["jaxlib (==0.3.5+cuda11.cudnn82)"] -minimum-jaxlib = ["jaxlib (==0.3.0)"] -tpu = ["jaxlib (==0.3.5)", "libtpu-nightly (==0.1.dev20220407)", "requests"] +australis = ["protobuf (>=3.13,<4)"] +ci = ["jaxlib (==0.4.1)"] +cpu = ["jaxlib (==0.4.2)"] +cuda = ["jaxlib (==0.4.2+cuda11.cudnn86)"] +cuda11_cudnn82 = ["jaxlib (==0.4.2+cuda11.cudnn82)"] +cuda11_cudnn86 = ["jaxlib (==0.4.2+cuda11.cudnn86)"] +minimum-jaxlib = ["jaxlib (==0.4.1)"] +tpu = ["jaxlib (==0.4.2)", "libtpu-nightly (==0.1.dev20230124)", "requests"] [[package]] name = "jaxlib" -version = "0.3.5" +version = "0.4.2" description = "XLA library for JAX" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -absl-py = "*" -flatbuffers = ">=1.12,<3.0" -numpy = ">=1.19" -scipy = "*" +numpy = ">=1.20" +scipy = ">=1.5" [[package]] name = "jedi" -version = "0.18.1" +version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." category = "dev" optional = false @@ -735,12 +783,13 @@ python-versions = ">=3.6" parso = ">=0.8.0,<0.9.0" [package.extras] +docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx-rtd-theme (==0.4.3)", "sphinx (==1.8.5)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"] qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] -testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] +testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] name = "jinja2" -version = "3.1.1" +version = "3.1.2" description = "A very fast and expressive template engine." category = "dev" optional = false @@ -752,9 +801,17 @@ MarkupSafe = ">=2.0" [package.extras] i18n = ["Babel (>=2.7)"] +[[package]] +name = "jsonpointer" +version = "2.3" +description = "Identify specific nodes in a JSON document (RFC 6901)" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "jsonschema" -version = "4.4.0" +version = "4.17.3" description = "An implementation of JSON Schema validation for Python" category = "dev" optional = false @@ -762,14 +819,21 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=17.4.0" -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} +idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} +isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} +jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format-nongpl\""} +pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} +rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} +rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""} +uri-template = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} +webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format-nongpl\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] -format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] +format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] [[package]] name = "jupyter" @@ -789,32 +853,31 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.2.2" +version = "8.0.2" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -entrypoints = "*" -jupyter-core = ">=4.9.2" -nest-asyncio = ">=1.5.4" +importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} +jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" python-dateutil = ">=2.8.2" -pyzmq = ">=22.3" -tornado = ">=6.0" -traitlets = "*" +pyzmq = ">=23.0" +tornado = ">=6.2" +traitlets = ">=5.3" [package.extras] -doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] +docs = ["ipykernel", "myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinx (>=4)", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] +test = ["codecov", "coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pytest", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"] [[package]] name = "jupyter-console" -version = "6.4.3" +version = "6.4.4" description = "Jupyter terminal console" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] ipykernel = "*" @@ -828,23 +891,89 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.9.2" +version = "5.2.0" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" [package.dependencies] +platformdirs = ">=2.5" pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} -traitlets = "*" +traitlets = ">=5.3" + +[package.extras] +docs = ["myst-parser", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "traitlets"] +test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] [[package]] -name = "jupyterlab-flake8" -version = "0.7.1" -description = "jupyterlab extension to lint python code in the notebook and text editor" +name = "jupyter-events" +version = "0.6.3" +description = "Jupyter Event System library" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" + +[package.dependencies] +jsonschema = {version = ">=3.2.0", extras = ["format-nongpl"]} +python-json-logger = ">=2.0.4" +pyyaml = ">=5.3" +rfc3339-validator = "*" +rfc3986-validator = ">=0.1.1" +traitlets = ">=5.3" + +[package.extras] +cli = ["click", "rich"] +docs = ["jupyterlite-sphinx", "myst-parser", "pydata-sphinx-theme", "sphinxcontrib-spelling"] +test = ["click", "coverage", "pre-commit", "pytest-asyncio (>=0.19.0)", "pytest-console-scripts", "pytest-cov", "pytest (>=7.0)", "rich"] + +[[package]] +name = "jupyter-server" +version = "2.2.1" +description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." +category = "dev" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +anyio = ">=3.1.0" +argon2-cffi = "*" +jinja2 = "*" +jupyter-client = ">=7.4.4" +jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-events = ">=0.4.0" +jupyter-server-terminals = "*" +nbconvert = ">=6.4.4" +nbformat = ">=5.3.0" +packaging = "*" +prometheus-client = "*" +pywinpty = {version = "*", markers = "os_name == \"nt\""} +pyzmq = ">=24" +send2trash = "*" +terminado = ">=0.8.3" +tornado = ">=6.2.0" +traitlets = ">=5.6.0" +websocket-client = "*" + +[package.extras] +docs = ["docutils (<0.20)", "ipykernel", "jinja2", "jupyter-client", "jupyter-server", "mistune (<1.0.0)", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi", "sphinxcontrib-spelling", "sphinxemoji", "tornado"] +test = ["ipykernel", "pre-commit", "pytest-console-scripts", "pytest-jupyter[server] (>=0.4)", "pytest-timeout", "pytest (>=7.0)", "requests"] + +[[package]] +name = "jupyter-server-terminals" +version = "0.4.4" +description = "A Jupyter Server Extension Providing Terminals." +category = "dev" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +pywinpty = {version = ">=2.0.3", markers = "os_name == \"nt\""} +terminado = ">=0.8.3" + +[package.extras] +docs = ["jinja2", "jupyter-server", "mistune (<3.0)", "myst-parser", "nbformat", "packaging", "pydata-sphinx-theme", "sphinxcontrib-github-alt", "sphinxcontrib-openapi", "sphinxcontrib-spelling", "sphinxemoji", "tornado"] +test = ["coverage", "jupyter-server (>=2.0.0)", "pytest-cov", "pytest-jupyter[server] (>=0.5.3)", "pytest-timeout", "pytest (>=7.0)"] [[package]] name = "jupyterlab-pygments" @@ -856,26 +985,23 @@ python-versions = ">=3.7" [[package]] name = "jupyterlab-widgets" -version = "1.1.0" -description = "A JupyterLab extension." +version = "3.0.5" +description = "Jupyter interactive widgets for JupyterLab" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "kiwisolver" -version = "1.4.2" +version = "1.4.4" description = "A fast implementation of the Cassowary constraint solver" category = "dev" optional = false python-versions = ">=3.7" -[package.dependencies] -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} - [[package]] name = "markupsafe" -version = "2.1.1" +version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." category = "dev" optional = false @@ -883,26 +1009,27 @@ python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.5.1" +version = "3.6.3" description = "Python plotting package" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] +contourpy = ">=1.0.1" cycler = ">=0.10" fonttools = ">=4.22.0" kiwisolver = ">=1.0.1" -numpy = ">=1.17" +numpy = ">=1.19" packaging = ">=20.0" pillow = ">=6.2.0" pyparsing = ">=2.2.1" python-dateutil = ">=2.7" -setuptools_scm = ">=4" +setuptools_scm = ">=7" [[package]] name = "matplotlib-inline" -version = "0.1.3" +version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" category = "dev" optional = false @@ -913,16 +1040,16 @@ traitlets = "*" [[package]] name = "mccabe" -version = "0.6.1" +version = "0.7.0" description = "McCabe checker, plugin for flake8" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "mistune" -version = "0.8.4" -description = "The fastest markdown parser in pure Python" +version = "2.0.4" +description = "A sane Markdown parser with useful plugins and renderers" category = "dev" optional = false python-versions = "*" @@ -938,7 +1065,6 @@ python-versions = ">=3.6" [package.dependencies] mypy-extensions = ">=0.4.3" tomli = ">=1.1.0" -typed-ast = {version = ">=1.4.0,<2", markers = "python_version < \"3.8\""} typing-extensions = ">=3.10" [package.extras] @@ -953,27 +1079,63 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "nbclassic" +version = "0.5.1" +description = "Jupyter Notebook as a Jupyter Server extension." +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=6.1.1" +jupyter-core = ">=4.6.1" +jupyter-server = [ + ">=1.17.0", + ">=1.8", +] +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +notebook-shim = ">=0.1.0" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +json-logging = ["json-logging"] +test = ["pytest", "coverage", "requests", "testpath", "nbval", "pytest-playwright", "pytest-cov", "pytest-jupyter", "pytest-tornasync", "requests-unixsocket"] + [[package]] name = "nbclient" -version = "0.6.0" +version = "0.7.2" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false python-versions = ">=3.7.0" [package.dependencies] -jupyter-client = ">=6.1.5" -nbformat = ">=5.0" -nest-asyncio = "*" -traitlets = ">=5.0.0" +jupyter-client = ">=6.1.12" +jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +nbformat = ">=5.1" +traitlets = ">=5.3" [package.extras] -sphinx = ["mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] -test = ["black", "check-manifest", "flake8", "ipykernel", "ipython (<8.0.0)", "ipywidgets (<8.0.0)", "mypy", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] +dev = ["pre-commit"] +docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient", "sphinx-book-theme", "sphinx (>=1.7)"] +test = ["ipykernel", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest-asyncio", "pytest-cov (>=4.0)", "pytest (>=7.0)", "testpath", "xmltodict"] [[package]] name = "nbconvert" -version = "6.5.0" +version = "7.2.9" description = "Converting Jupyter Notebooks" category = "dev" optional = false @@ -983,12 +1145,12 @@ python-versions = ">=3.7" beautifulsoup4 = "*" bleach = "*" defusedxml = "*" -entrypoints = ">=0.2.2" +importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} jinja2 = ">=3.0" jupyter-core = ">=4.7" jupyterlab-pygments = "*" -MarkupSafe = ">=2.0" -mistune = ">=0.8.1,<2" +markupsafe = ">=2.0" +mistune = ">=2.0.3,<3" nbclient = ">=0.5.0" nbformat = ">=5.1" packaging = "*" @@ -998,15 +1160,17 @@ tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)", "tornado (>=6.1)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] -docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["nbconvert"] +docs = ["ipykernel", "ipython", "myst-parser", "nbsphinx (>=0.2.12)", "pydata-sphinx-theme", "sphinx (==5.0.2)", "sphinxcontrib-spelling"] +qtpdf = ["nbconvert"] +qtpng = ["pyqtwebengine (>=5.15)"] serve = ["tornado (>=6.1)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pre-commit", "pyppeteer (>=1,<1.1)"] +test = ["ipykernel", "ipywidgets (>=7)", "pre-commit", "pytest", "pytest-dependency"] webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.3.0" +version = "5.7.3" description = "The Jupyter Notebook format" category = "dev" optional = false @@ -1016,14 +1180,15 @@ python-versions = ">=3.7" fastjsonschema = "*" jsonschema = ">=2.6" jupyter-core = "*" -traitlets = ">=4.1" +traitlets = ">=5.1" [package.extras] -test = ["check-manifest", "testpath", "pytest", "pre-commit"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] +test = ["pep440", "pre-commit", "pytest", "testpath"] [[package]] name = "nest-asyncio" -version = "1.5.5" +version = "1.5.6" description = "Patch asyncio to allow nested event loops" category = "dev" optional = false @@ -1031,15 +1196,15 @@ python-versions = ">=3.5" [[package]] name = "nodeenv" -version = "1.6.0" +version = "1.7.0" description = "Node.js virtual environment builder" category = "dev" optional = false -python-versions = "*" +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" [[package]] name = "notebook" -version = "6.4.12" +version = "6.5.2" description = "A web-based notebook environment for interactive computing" category = "dev" optional = false @@ -1052,6 +1217,7 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" +nbclassic = ">=0.4.7" nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" @@ -1065,15 +1231,29 @@ traitlets = ">=4.2.1" [package.extras] docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] json-logging = ["json-logging"] -test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] +test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium (==4.1.5)", "pytest-cov", "requests-unixsocket"] + +[[package]] +name = "notebook-shim" +version = "0.2.2" +description = "A shim layer for notebook traits and config" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +jupyter-server = ">=1.8,<3" + +[package.extras] +test = ["pytest", "pytest-console-scripts", "pytest-tornasync"] [[package]] name = "numpy" -version = "1.21.1" -description = "NumPy is the fundamental package for array computing with Python." +version = "1.24.1" +description = "Fundamental package for array computing in Python" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "opt-einsum" @@ -1092,7 +1272,7 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"] [[package]] name = "optax" -version = "0.1.2" +version = "0.1.4" description = "A gradient processing and optimisation library in JAX." category = "main" optional = false @@ -1100,7 +1280,7 @@ python-versions = ">=3.7" [package.dependencies] absl-py = ">=0.7.1" -chex = ">=0.0.4" +chex = ">=0.1.5" jax = ">=0.1.55" jaxlib = ">=0.1.37" numpy = ">=1.18.0" @@ -1108,30 +1288,31 @@ typing-extensions = ">=3.10.0" [[package]] name = "packaging" -version = "21.3" +version = "23.0" description = "Core utilities for Python packages" category = "dev" optional = false -python-versions = ">=3.6" - -[package.dependencies] -pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" +python-versions = ">=3.7" [[package]] name = "pandas" -version = "1.1.5" +version = "1.5.3" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.8" [package.dependencies] -numpy = ">=1.15.4" -python-dateutil = ">=2.7.3" -pytz = ">=2017.2" +numpy = [ + {version = ">=1.20.3", markers = "python_version < \"3.10\""}, + {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, + {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, +] +python-dateutil = ">=2.8.1" +pytz = ">=2020.1" [package.extras] -test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"] +test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] [[package]] name = "pandas-vet" @@ -1167,23 +1348,22 @@ testing = ["docopt", "pytest (<6.0.0)"] [[package]] name = "pathspec" -version = "0.9.0" +version = "0.11.0" description = "Utility library for gitignore style pattern matching of file paths." category = "dev" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = ">=3.7" [[package]] name = "pep8-naming" -version = "0.12.1" +version = "0.13.3" description = "Check PEP-8 naming conventions, plugin for flake8" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] -flake8 = ">=3.9.1" -flake8-polyfill = ">=1.0.2,<2" +flake8 = ">=5.0.0" [[package]] name = "pexpect" @@ -1206,27 +1386,35 @@ python-versions = "*" [[package]] name = "pillow" -version = "9.1.1" +version = "9.4.0" description = "Python Imaging Library (Fork)" category = "dev" optional = false python-versions = ">=3.7" [package.extras] -docs = ["olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinx-rtd-theme (>=1.0)", "sphinxext-opengraph"] +docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] +[[package]] +name = "pkgutil-resolve-name" +version = "1.3.10" +description = "Resolve a name to an object." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "platformdirs" -version = "2.5.1" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +version = "2.6.2" +description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false python-versions = ">=3.7" [package.extras] -docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] -test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] +docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.19.5)", "sphinx (>=5.3)"] +test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2)"] [[package]] name = "pluggy" @@ -1236,33 +1424,28 @@ category = "dev" optional = false python-versions = ">=3.6" -[package.dependencies] -importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} - [package.extras] dev = ["pre-commit", "tox"] testing = ["pytest", "pytest-benchmark"] [[package]] name = "pre-commit" -version = "2.18.1" +version = "3.0.3" description = "A framework for managing and maintaining multi-language pre-commit hooks." category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] cfgv = ">=2.0.0" identify = ">=1.0.0" -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} nodeenv = ">=0.11.1" pyyaml = ">=5.1" -toml = "*" -virtualenv = ">=20.0.8" +virtualenv = ">=20.10.0" [[package]] name = "prometheus-client" -version = "0.14.1" +version = "0.16.0" description = "Python client for the Prometheus monitoring system." category = "dev" optional = false @@ -1273,7 +1456,7 @@ twisted = ["twisted"] [[package]] name = "prompt-toolkit" -version = "3.0.29" +version = "3.0.36" description = "Library for building powerful interactive command lines in Python" category = "dev" optional = false @@ -1284,14 +1467,14 @@ wcwidth = "*" [[package]] name = "psutil" -version = "5.9.0" +version = "5.9.4" description = "Cross-platform lib for process and system monitoring in Python." category = "dev" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] -test = ["ipaddress", "mock", "unittest2", "enum34", "pywin32", "wmi"] +test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"] [[package]] name = "ptyprocess" @@ -1302,20 +1485,23 @@ optional = false python-versions = "*" [[package]] -name = "py" -version = "1.11.0" -description = "library with cross-python path, ini-parsing, io, code, log facilities" +name = "pure-eval" +version = "0.2.2" +description = "Safely evaluate AST nodes without side effects" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "*" + +[package.extras] +tests = ["pytest"] [[package]] name = "pycodestyle" -version = "2.8.0" +version = "2.10.0" description = "Python style guide checker" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [[package]] name = "pycparser" @@ -1327,37 +1513,40 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pydocstyle" -version = "6.1.1" +version = "6.3.0" description = "Python docstring style checker" category = "dev" optional = false python-versions = ">=3.6" [package.dependencies] -snowballstemmer = "*" +snowballstemmer = ">=2.2.0" [package.extras] -toml = ["toml"] +toml = ["tomli (>=1.2.3)"] [[package]] name = "pyflakes" -version = "2.4.0" +version = "3.0.1" description = "passive checker of Python programs" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [[package]] name = "pygments" -version = "2.11.2" +version = "2.14.0" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" + +[package.extras] +plugins = ["importlib-metadata"] [[package]] name = "pyparsing" -version = "3.0.8" +version = "3.0.9" description = "pyparsing module - Classes and methods to define and execute parsing grammars" category = "dev" optional = false @@ -1368,7 +1557,7 @@ diagrams = ["railroad-diagrams", "jinja2"] [[package]] name = "pyrsistent" -version = "0.18.1" +version = "0.19.3" description = "Persistent/Functional/Immutable data structures" category = "dev" optional = false @@ -1376,29 +1565,27 @@ python-versions = ">=3.7" [[package]] name = "pytest" -version = "7.1.1" +version = "7.2.1" description = "pytest: simple powerful testing with Python" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} -importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} +exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" -py = ">=1.8.2" -tomli = ">=1.0.0" +tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] [[package]] name = "pytest-cov" -version = "3.0.0" +version = "4.0.0" description = "Pytest plugin for measuring coverage." category = "dev" optional = false @@ -1411,30 +1598,17 @@ pytest = ">=4.6" [package.extras] testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] -[[package]] -name = "pytest-forked" -version = "1.4.0" -description = "run tests in isolated forked subprocesses" -category = "dev" -optional = false -python-versions = ">=3.6" - -[package.dependencies] -py = "*" -pytest = ">=3.10" - [[package]] name = "pytest-xdist" -version = "2.5.0" -description = "pytest xdist plugin for distributed testing and loop-on-failing modes" +version = "3.1.0" +description = "pytest xdist plugin for distributed testing, most importantly across multiple CPUs" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] execnet = ">=1.1" pytest = ">=6.2.0" -pytest-forked = "*" [package.extras] psutil = ["psutil (>=3.0)"] @@ -1452,9 +1626,17 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" [package.dependencies] six = ">=1.5" +[[package]] +name = "python-json-logger" +version = "2.0.4" +description = "A python library adding a json log formatter" +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "pytz" -version = "2022.1" +version = "2022.7.1" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -1462,7 +1644,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "303" +version = "305" description = "Python for Window Extensions" category = "dev" optional = false @@ -1470,7 +1652,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "2.0.5" +version = "2.0.10" description = "Pseudo terminal support for Windows from Python." category = "dev" optional = false @@ -1486,7 +1668,7 @@ python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "22.3.0" +version = "25.0.0" description = "Python bindings for 0MQ" category = "dev" optional = false @@ -1494,11 +1676,10 @@ python-versions = ">=3.6" [package.dependencies] cffi = {version = "*", markers = "implementation_name == \"pypy\""} -py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] name = "qtconsole" -version = "5.3.0" +version = "5.4.0" description = "Jupyter Qt console" category = "dev" optional = false @@ -1512,7 +1693,7 @@ jupyter-core = "*" pygments = "*" pyzmq = ">=17.1" qtpy = ">=2.0.1" -traitlets = "*" +traitlets = "<5.2.1 || >5.2.1,<5.2.2 || >5.2.2" [package.extras] doc = ["Sphinx (>=1.3)"] @@ -1520,28 +1701,52 @@ test = ["flaky", "pytest", "pytest-qt"] [[package]] name = "qtpy" -version = "2.0.1" +version = "2.3.0" description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] packaging = "*" [package.extras] -test = ["pytest (>=6.0.0)", "pytest-cov (>=3.0.0)", "pytest-qt"] +test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"] + +[[package]] +name = "rfc3339-validator" +version = "0.1.4" +description = "A pure python RFC3339 validator" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.dependencies] +six = "*" + +[[package]] +name = "rfc3986-validator" +version = "0.1.1" +description = "Pure python rfc3986 validator" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "scipy" -version = "1.6.1" -description = "SciPy: Scientific Library for Python" +version = "1.9.3" +description = "Fundamental algorithms for scientific computing in Python" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -numpy = ">=1.16.5" +numpy = ">=1.18.5,<1.26.0" + +[package.extras] +test = ["pytest", "pytest-cov", "pytest-xdist", "asv", "mpmath", "gmpy2", "threadpoolctl", "scikit-umfpack"] +doc = ["sphinx (!=4.1.0)", "pydata-sphinx-theme (==0.9.0)", "sphinx-panels (>=0.5.2)", "matplotlib (>2)", "numpydoc", "sphinx-tabs"] +dev = ["mypy", "typing-extensions", "pycodestyle", "flake8"] [[package]] name = "send2trash" @@ -1558,15 +1763,16 @@ win32 = ["pywin32"] [[package]] name = "setuptools-scm" -version = "6.4.2" +version = 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"] license = "MIT" @@ -9,40 +9,38 @@ readme = "README.md" [tool.poetry.dependencies] -python = "^3.7" -jax = "^0.3.5" -jaxlib = "^0.3.5" -optax = "^0.1.2" +python = "^3.8.1" +jax = "^0.4.2" +jaxlib = "^0.4.2" +optax = "^0.1.4" pandas = ">=1.1" -dill = "^0.3.4" -tqdm = "^4.64.0" +dill = "^0.3.6" +tqdm = "^4.64.1" [tool.poetry.dev-dependencies] -pre-commit = "^2.16.0" -black = "^21.12b0" +pre-commit = "^3.0.3" +black = "^23.1.0" mypy = "^0.931" -isort = "^5.10.1" -flake8 = "^4.0.1" -flake8-broken-line = "^0.4.0" -flake8-bugbear = "^22.1.11" -flake8-builtins = "^1.5.3" -flake8-comprehensions = "^3.8.0" -flake8-docstrings = "^1.6.0" -flake8-eradicate = "^1.2.0" -flake8-isort = "^4.1.1" -flake8-markdown = "^0.3.0" -flake8-print = "^4.0.0" +isort = "^5.12.0" +flake8 = "^6.0.0" +flake8-bugbear = "^23.1.20" +flake8-builtins = "^2.1.0" +flake8-comprehensions = "^3.10.1" +flake8-docstrings = "^1.7.0" +flake8-isort = "^6.0.0" +flake8-markdown = "^0.4.0" +flake8-print = "^5.0.0" flake8-pytest-style = "^1.6.0" -flake8-simplify = "^0.14.5" -flake8-tidy-imports = "^4.6.0" -jupyterlab-flake8 = "^0.7.1" -pandas-vet = "^0.2.2" -pep8-naming = "^0.12.1" -pytest = "^7.1.1" -pytest-cov = "^3.0.0" -pytest-xdist = "^2.5.0" +flake8-simplify = "^0.19.3" +flake8-tidy-imports = "^4.8.0" +pandas-vet = "^0.2.3" +pep8-naming = "^0.13.3" +pytest = "^7.2.1" +pytest-cov = "^4.0.0" +pytest-xdist = "^3.1.0" jupyter = "^1.0.0" -matplotlib = "^3.5.1" +matplotlib = "^3.6.3" +toml = "^0.10.2" [build-system] requires = ["poetry-core>=1.0.0"] @@ -59,4 +57,4 @@ use_parentheses = true line_length = 79 [tool.pyright] -reportGeneralTypeIssues = false \ No newline at end of file +reportGeneralTypeIssues = false diff --git a/pzflow/__init__.py b/pzflow/__init__.py index 7264415..4a27046 100644 --- a/pzflow/__init__.py +++ b/pzflow/__init__.py @@ -2,4 +2,4 @@ from pzflow.flow import Flow from pzflow.flowEnsemble import FlowEnsemble -__version__ = "3.0.2" +__version__ = "3.0.3" diff --git a/pzflow/distributions.py b/pzflow/distributions.py index 59c3f3a..2047c78 100644 --- a/pzflow/distributions.py +++ b/pzflow/distributions.py @@ -429,16 +429,14 @@ def log_prob(self, params: Pytree, inputs: jnp.ndarray) -> jnp.ndarray: """ # which inputs are inside the support of the distribution - mask = ( - ((inputs >= -self.B) & (inputs <= self.B)) - .astype(float) - .prod(axis=-1) - ) + mask = jnp.prod((inputs >= -self.B) & (inputs <= self.B), axis=-1) # calculate log_prob - prob = mask / (2 * self.B) ** self.input_dim - prob = jnp.where(prob == 0, epsilon, prob) - log_prob = jnp.log(prob) + log_prob = jnp.where( + mask, + -self.input_dim * jnp.log(2 * self.B), + -jnp.inf, + ) return log_prob