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Related to issue #123, add a parameter canonical to proteinToGenome or proteinToTranscript to perform the coordinate conversion only using the canonical transcript.
The text was updated successfully, but these errors were encountered:
Thinking it over - maybe an even easier solution would be to simply pre-filter the whole database before with
edb<- filter(edb, filter=~tx_is_canonical==1)
and then do the conversion - that way we will use only the canonical transcripts - no need for an additional parameter. Only thing is to document that properly.
Related to issue #123, add a parameter
canonical
toproteinToGenome
orproteinToTranscript
to perform the coordinate conversion only using the canonical transcript.The text was updated successfully, but these errors were encountered: