posters.bib

@inproceedings{hecheng_rest,
  author={Hecheng, Jin and Ramirez, Julian S.B. and Vogelstein, Joshua T. and Milham, Michael P. and Xu, Ting},
  address = {Fairmont, Dallas, TX, USA},
  author+an = {3=highlight},
  title = {Assessing functional connectivity beyond Pearson's correlation},
  month = {September},
  year = {2020}
}

@inproceedings{BridgefordNeuro2020,
author={Bridgeford, Eric W. and Powell, Michael and Alyakin, Anton and Caffo, Brian and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 2=trainee; 3=trainee; 5=highlight},
title={Batch Effects are Causal Effects: Applications in Human Functional Connectomes},
month={November},
year={2020},
}

@inproceedings{TingshanNeuro2020,
author={Liu, Tingshan and Pedigo, Benjamin D. and Athey, Thomas L. and Vogelstin, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 2=trainee; 3=trainee; 4=highlight},
title={Hierarchical stochastic block modeling in the Drosophila connectome},
month={November},
year={2020},
}

@inproceedings{SaadNeuro2020,
author={Saad-Eldin, Ali and Pedigo, Benjamin D. and Park, Youngser and Priebe, Carey E. and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 2=trainee; 3=trainee; 5=highlight},
title={NeuroGraphMatch},
month={November},
year={2020},
}

@inproceedings{J1Neuro2020,
author={Chung, Jaewon and Dey, Jayanta and Kiar, Gregory and Priebe, Carey E. and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 2=trainee; 3=trainee; 5=highlight},
title={Human Structural Connectomes are Heritable},
month={November},
year={2020},
}

@inproceedings{PedigoNeuro2020,
author={Pedigo, Benjamin D. and Winding, Michael and Saad-Eldin, Ali and Liu, Tingshan and Cardona, Albert and Zlatic, Marta and Priebe, Carey E. and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 3=trainee; 8=highlight},
title={Statistical tools for nanoscale connectomics: clustering neurons in Drosophila larva brain and other applications},
month={November},
year={2020},
}

@inproceedings{RonanNeuro2020,
author={Perry, Ronan and Zorn, Jelle and Czajko, Sebastien and Margulies, Daniel S. and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an ={1=trainee; 5=highlight},
title={Permutation-corrected independence testing for high-dimensional fMRI data},
month={November},
year={2020},
}

@inproceedings{VivekNeuro2020,
author = {Gopalakrishnan, Vivek and Chung, Jaewon and Bridgeford, Eric and Arroyo, Jesus and Pedigo, Benjamin D. and Priebe, Carey E. and Vogelstein, Joshua T.},
address = {Neuromatch 3},
author+an = {1=trainee; 2=trainee; 3=trainee; 4=trainee; 5=trainee; 7=highlight},
title = {Statistical Methods for Multiscale Comparative Connectomics},
month = {November},
year = {2020}
}

@inproceedings{ThomasNeuro2020,
author={Athey, Thomas L and Sulam, Jeremias and Vogelstein, Joshua and Tward, Daniel and Miller, Michael},
address = {Neuromatch 3},
author+an ={3=highlight; 1=trainee},
title={Automated Neuron Tracing of Sparse Fluorescently Labeled Neurons},
month={November},
year={2020},
}

@inproceedings{Cho_rest,
  author={Cho, J.W. and Korchmaros, A. and Vogelstein, Joshua T. and Milham, Michael P. and Xu, Ting},
  address = {OHBM and Resting State, Fairmont, Dallas, TX, USA},
  author+an = {3=highlight},
  title = {Impact of Concatenating fMRI Data on reliability for Functional Connectomics},
  month = {June & September},
  year = {2020}
}

@inproceedings{Cho_rest2,
  author={Cho, J.W. and Korchmaros, A. and Vogelstein, Joshua T. and Milham, Michael P. and Xu, Ting},
  address = {OHBM and Resting State, Fairmont, Dallas, TX, USA},
  title = {Developing a gradient flow framework to guide the optimization of reliability for the study of individual differences},
  month = {June and September},
  author+an = {3=highlight},
  year = {2020}
}
@inproceedings{Cho_rest2,
  author={Cho, J.W. and Korchmaros, A. and Vogelstein, Joshua T. and Milham, Michael P. and Xu, Ting},
  address = {OHBM and Resting State, Fairmont, Dallas, TX, USA},
  title = {Developing a gradient flow framework to guide the optimization of reliability for the study of individual differences},
  month = {June and September},
  author+an = {3=highlight},
  year = {2020}
}

@inproceedings{Li_rest,
  author={Li, X and Cho, J.W. and Milham, Michael P. and Xu, Ting},
  address = {Resting State, Fairmont, Dallas, TX, USA},
  title = {Improving brain-behavior prediction using individual-specific components from connectivity-based shared response model},
  month = {September},
  year = {2020}
}

@inproceedings{Ronan_OHBM2020,
  author={Perry, Ronan and Vogelstein, Joshua T.},
  address = {OHBM},
  author+an = {1=trainee; 2=highlight},
  title = {Identifying Differences Between Expert and Novice Meditator Brain Scans via Multiview Embedding},
  month = {June},
  year = {2020}
}

@inproceedings{Eric_OHBM2020,
  author={Bridgeford, Eric and Vogelstein, Joshua T.},
  address = {OHBM},
  author+an = {1=trainee; 2=highlight},
  title = {Optimal Experimental Design for Big Data: Applications in Brain Imaging},
  month = {June},
  year = {2020}
}

@inproceedings{Tommy_BIM2019,
  author={Athey, Thomas L. and Vogelstein, Joshua T.},
  author+an = {1=trainee; 2=highlight},
  title= {Low-level Neuron Segmentation in Sub-Micron Resolution Images of the Complete Mouse Brain},
  address = {Brain Initiative Investigators Meeting, Washington DC, USA},
  month = {April},
  year = {2019}
}

@inproceedings{Tommy_BIM2019_2,
  author={Athey, Thomas L. and Vogelstein, Joshua T.},
  author+an = {1=trainee; 2=highlight},
  title= {Investigating Neuron Trajectories with Splines},
  address = {Brain Initiative Investigators Meeting, Washington DC, USA},
  month = {April},
  year = {2019}
}

@inproceedings{perlman_kndi_2017,
  author = {Perlman, Eric},
  address = {Kavli, Baltimore, MD, USA},
  title = {NEURODATA: ENABLING BIG DATA NEUROSCIENCE},
  url = {https://neurodata.io/talks/perlman_kndi_2017.pdf},
  year = {2017}
}

@inproceedings{pedigo_naisys_2020,
  author = {Pedigo, Benjamin D and Winding, Michael and Orujlu, Turan and Zlatic, Marta and Cardona,Albert and Priebe, Carey E and Vogelstein, Joshua T},
  author+an = {1=trainee; 7=highlight},
  address = {NAIsys, Cold Spring Harbor, NY, USA},
  title = {A quantitative comparison of a complete connectome to artificial intelligence architectures},
  month = {November},
  year = {2020}
}

@inproceedings{hayden_naisys_2020,
  author = {Vogelstein, Joshua T. and Helm, Hayden and Pedigo, Benjamin D. and Mehta, Ronak and Priebe, Carey E. and White, Chris},
  author+an = {2=trainee;3=trainee;4=trainee;1=highlight},
  address = {NAIsys, Cold Spring Harbor, NY, USA},
  title = {A Biological Implementation of Lifelong Learning in the Pursuit of Artificial General Intelligence},
  month = {November},
  year = {2020}
}

@inproceedings{berlin_2017,
  author = {Baden, Alex and Perlman, Eric and  Collman, Forrest and Smith, Stephen and Vogelstein, Joshua T. and Burns, Randal},
  author+an = {1=trainee;5=highlight},
  address = {Berlin, Germany},
  title = {Processing and Analyzing Terascale Conjugate Array Tomography Data},
  url = {https://neurodata.io/talks/berlin_2017.pdf},
  year = {2017}
}

@inproceedings{falk_open_data2019,
  author = {Falk, Benjamin and Vogelstein, Joshua T.},
  author+an = {2=highlight},
  address = {Harvard University, Cambridge, MA, USA},
  title = {NeuroData's Open Data Cloud Ecosystem},
  month = {July},
  url = {https://neurodata.io/talks/25_NeuroDatas_Open_Data_Ecosystem.pdf},
  year = {2019}
}
@inproceedings{j12019,
  title={Clustering Multi-Modal Connectomes},
  author={Chung, Jaewon and Pedigo, Benjamin D. and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;4=highlight},
  address={OHBM, Rome Italy},
  url={https://figshare.com/articles/Clustering_Multi-Modal_Connectomes/8309672},
  month = {June},
  year={2019}
}
@inproceedings{browneposter2019,
  title={Forest Packing: Fast Parallel Decision Forests},
  author={Browne, James and Mhembere, Disa and Tomita, Tyler M. and Vogelstein, Joshua T. and Burns, Randal},
  author+an = {1=trainee;2=trainee;3=trainee;4=highlight},
  address={SIAM International Conference on Data Mining, Calgary, Alberta, Canada},
  url={https://figshare.com/articles/Forest_Packing_Fast_Parallel_Decision_Forests/8194142},
  month = {May},
  year={2019}
}
@inproceedings{pedigo2019,
  title={GraSPy: an Open Source Python Package for Statistical Connectomics},
  author={Pedigo, Benjamin D. and Chung, Jaewon and Bridgeford, Eric W. and Varjavand, Bijan and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;3=trainee;4=trainee;6=highlight},
  address={Max Planck /HHMI Connectomics Meeting Berlin, Germany},
  url={https://figshare.com/articles/GraSPy_an_Open_Source_Python_Package_for_Statistical_Connectomics/7982888},
  month = {April},
  year={2019}
}
@inproceedings{chun2019struct,
  title={Human Structural Connectomes are Heritable},
  author={Chung, Jaewon and Pedigo, Benjamin D. and Priebe, Carey E. and Vogelstein, Joshua T.},
  author+an = {1=trainee;2=trainee;4=highlight},
  address={OHBM, Rome Italy},
  url={https://figshare.com/articles/Structural_Connectomes_are_Heritable/7800587},
  month = {June},
  year={2019}
}
@inproceedings{sikka2014towards,
  title={Towards automated analysis of connectomes: The configurable pipeline for the analysis of connectomes (c-pac)},
  author={Sikka, Sharad AND Cheung, Brian AND Khanuja, Ranjit AND Ghosh, Satra AND Yan, Chao-gan AND Li, Qingyang AND Vogelstein, Joshua AND Burns, Randal AND Colcombe, Stanley AND Craddock, Cameron AND Mennes, Maarten AND Kelly, Clare AND Dimartino, Adriana AND Castellanos, Francisco AND Milham, Michael },
  author+an = {7=highlight},
  address={5th INCF Congress of Neuroinformatics, Munich, Germany},
  volume={10},
  url={https://www.frontiersin.org/10.3389/conf.fninf.2014.08.00117/event_abstract},
  month = {August},
  year={2014}
}
@inproceedings{koutra2013all,
  title={Are All Brains Wired Equally?},
  author={Koutra, Danai and Gong, Yu and Ryman, Sephira and Jung, Rex and Vogelstein, Joshua T. and Faloutsos, Christos},
  author+an = {5=highlight},
  url={http://dx.doi.org/10.6084/m9.figshare.1284149},
  address={Proceedings of the 19th Annual Meeting of the Organization for Human Brain Mapping (OHBM), Seattle, WA, USA},
  volume={1},
  number={4.2},
  pages={3},
  month = {June},
  year={2013}
}

@inproceedings{Vogelstein2015a,
author = {Chen, Shaojie and Vogelstein, Joshua T and Lee, Seonjoo and Lindquist, Martin and Caffo, Brian},
author+an = {1=trainee;2=highlight},
address = {ENAR 2015, Miami, FL, USA},
title = {High Dimensional State Space Model with L-1 and L-2 Penalties},
url = {http://www.enar.org/abstracts/2015_Program_Abstracts_03-02-15.pdf},
month = {March},
year = {2015}
}
@inproceedings{_Nonparametric_2013,
author = {Vogelstein, Joshua T and Priebe, Carey E},
author+an = {1=highlight},
address = {Duke Workshop on Sensing and Analysis of HighDimensional Data, Durham, NC, USA},
title = {Nonparametric Two-Sample Testing on Graph-Valued Data.},
month = {July},
year = {2013}
}
@inproceedings{Qin2013a,
author = { Qin, Yichen and Mhembere, Disa and Ryman, Sephira and Jung, Rex and Vogelstein, R. Jacob and Burns, Randal and Vogelstein, Joshua and Priebe, Carey },
author+an = {2=trainee;5=highlight},
address = {OHBM, Seattle, WA, USA},
title = {Robust Clustering of Adjacency Spectral Embeddings of Brain Graph Data via Lq-Likelihood},
url = {http://dx.doi.org/10.6084/m9.figshare.1284153},
month = {June},
year = {2013}
}
@inproceedings{Sussman2013,
author = { Sussman, Daniel L and Mhembere, Disa and Ryman, Sephira and Jung, Rex and Vogelstein, R. Jacob and Burns, Randal and Vogelstein, Joshua T and Priebe, Carey E },
author+an={2=trainee,7=highlight},
address = {OHBM, Seattle, WA, USA},
title = {Massive Diffusion MRI Graph Structure Preserves Spatial Information},
url = {http://dx.doi.org/10.6084/m9.figshare.1284155},
month = {June},
year = {2013}
}
@inproceedings{Mhembere2013a,
author = { Mhembere, Disa AND Burns, Randal AND Vogelstein, Joshua T. AND Vogelstein, R. Jacob AND Sussman, Daniel AND Preibe, Carey AND Jung, Rex, AND Ryman, Sephira },
author+an={1=trainee;2=highlight},
title = {Multivariate Invariants from Massive Brain-Graphs},
url = {http://dx.doi.org/10.6084/m9.figshare.1284154},
address = {OHBM, Seattle, WA, USA},
month = {June},
year = {2013}
}
@inproceedings{Gray2013,
author= { Gray Roncal, William AND Kleissas, Dean M. AND Burck, James M. AND Manavalan, Priya AND Vogelstein, Joshua T. AND Perlman, Eric AND Burns, Randal AND Vogelstein, R. Jacob },
author+an={1=trainee;5=highlight},
address = {OHBM, Seattle, WA, USA},
title = {Towards a Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284151},
month = {June},
year = {2013}
}
@inproceedings{Sismanis2013,
author = { Sismanis, N. AND Sussman, D. L. AND Vogelstein, J. T. AND Gray, W. AND Vogelstein, R. J. AND Perlman, E. AND Mhembere, D. AND Ryman, S. AND Jung, R. AND Burns, R. AND Priebe, C. E. AND Pitsianis, N. AND Sun, X.  },
author+an={3=highlight;4=trainee;7=trainee},
address = {5th Panhellic Conference on Biomedical Technology, Athens, Greece},
title = {Feature Clustering from a Brain Graph for Voxel-to-Region Classification},
url = {http://dx.doi.org/10.6084/m9.figshare.1284143},
month = {April},
year = {2013}
}
@inproceedings{Vogelstein2013c,
author = {Vogelstein, Joshua T and others},
author+an = {1=highlight},
address = {DARPA XDATA Colloquium},
title = {{Anomaly Screening and Clustering of Multi-OBject Movies via Multiscale Structure Learning}},
year = {2013}
}
@inproceedings{Pnevmatikakis2013,
author = { Pnevmatikakis, Eftychios A. AND Machado, Tim AND Grosenick, Logan AND Poole, Ben AND Vogelstein, Joshua T. AND Paninsk Liam },
author+an = {5=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Rank-penalized nonnegative spatiotemporal deconvolution and demixing of calcium inaging data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284170},
month = {March},
year = {2013}
}
@inproceedings{Airan2013,
author = { Raag D, Airan AND Vogelstein, Joshua AND Caffo, Brian AND Pekar, James J AND Haris I, Sair },
author+an = {2=highlight},
address = {Proc ISMRM, Salt Lake City, UT, USA},
pages = {1932},
title = {Reproducible differentiation of individual of individual subjects with minimal acquisition time via resting state fMRI},
url = {http://dx.doi.org/10.6084/m9.figshare.1284146},
month = {April},
year = {2013}
}
@inproceedings{Gray2012b,
author = { Gray, William R. AND Kleissas, Dean M. AND Burck, James M. AND Vogelstein, Joshua T. AND Perlman, Eric AND Burlina, Philippe M. AND Burns, Randal AND Vogelstein R. Jacob },
author+an= {4=highlight;1=trainee},
address = {Cold Spring Harbor Laboratory, Neuronal Circuits, Cold Spring Harbor, NY, USA},
title = {Towards a Fully Automatic Pipeline for Connectome Estimation from High-Resolution EM Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284176},
year = {2012}
}
@inproceedings{Vogelstein2012a,
author = { Vogelstein, Joshua T. AND Bock, Davi AND Gray, William AND Sussman, Daniel AND Burns, Randal AND Kleissas, Dean AND Marchette, David AND Fishkind, Donniell E. AND Tang, Minh AND Hager, Greg AND Vogelstein, R. Jacob AND Priebe Carey E.  },
author+an = {1=highlight;3=trainee},
address = {Janelia Farm conference, Statistical Inference and Neuroscience, Loudoun County, VA, USA},
title = {Statistical Connectomics},
url = {http://dx.doi.org/10.6084/m9.figshare.1284174},
month = {May},
year = {2012}
}
@inproceedings{Vogelstein2012,
author = { Vogelstein, J. AND Sikka, S. AND Cheung, B. AND Khanuja, R. AND Li, Q. AND Yan C,.G. AND Priebe, C. AND Calhoun, V. AND Vogelstein, R. J. AND Milham, M. AND Burns, R.},
author+an = {1=highlight},
address = {Neuroinformatics, Munich, Germany},
title = {BRAINSTORM towards clinically and scientifically useful neuroimaging analytics},
url = {http://dx.doi.org/10.6084/m9.figshare.1284173},
month = {September},
year = {2012}
}
@inproceedings{Vogelstein2011g,
author = {Vogelstein, J T and Fishkind, D E and Sussman, D L and Priebe, C E},
author+an = {1=highlight},
address = {IMA conference on Large Graphs, University of Minnesota, Minneapolis, MN, USA},
title = {Large graph classification: theory and statistical connectomics applications},
url = {http://dx.doi.org/10.6084/m9.figshare.1284184},
month = {October},
year = {2011}
}
@inproceedings{Vogelstein2011f,
author = {Vogelstein, Joshua T and Sussman, D L and Tang, M and Fishkind, D E and Priebe, Carey E},
author+an = {1=highlight},
address = {IMA conference on Large Graphs, University of Minnesota, Minneapolis, MN, USA},
title = {{Dot product embedding in large (errorfully observed) graphs with applications in statistical connectomics}},
month = {October},
year = {2011}
}
@inproceedings{Vogelstein2011h,
author = {Vogelstein, Joshua T and Gray, William R and Vogelstein, R Jacob and Bogovic, J and Resnick, S and Prince, J and Priebe, Carey E},
author+an = {1=highlight;2=trainee},
address = {Organization for Human Brain Mapping, Quebec City, Canada},
title = {Connectome Classification: Statistical Graph Theoretic Methods for Analysis of MR-Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1284179},
month = {June},
year = {2011}
}
@article{Vogelstein2011e,
author = {Vogelstein, Joshua T and Perlman, E and Bock, D and Lee, W C and Chang, M and Kasthuri, B and Kazhdan, M and Reid, C and Lichtman, J and Burns, R and Vogelstein, R Jacob},
author+an = {1=highlight},
journal = {Neuroinformatics, Boston, MA, USA},
title = {Open Connectome Project: collectively reverse engineering the brain one synapse at a time},
url = {http://dx.doi.org/10.6084/m9.figshare.1284181},
month = {September},
year = {2011}
}
@inproceedings{Vogelstein2011d,
author = {Vogelstein, Joshua T and Gray, W and Martin, J G and Coppersmith, G C and Dredze, M and Bogovic, J and Prince, J L and Resnick, S M and Priebe, Carey E and Vogelstein, R J},
author+an = {1=highlight;2=trainee},
address = {Society for Neuroscience, Washington DC, USA},
title = {Connectome Classification using statistical graph theory and machine learning},
url = {http://dx.doi.org/10.6084/m9.figshare.1284178},
month = {October},
year = {2011}
}
@inproceedings{Gray2011,
author = {Gray, William R and Bogovic, J A and Vogelstein, Joshua T and Ye, C and Landman, B A and Prince, J L and Vogelstein, R Jacob},
author+an = {3=highlight;1=trainee},
address = {Society for Neuroscience, Washington DC, USA},
title = {Magnetic resonance connectome automated pipeline and repeatability analysis},
url = {http://dx.doi.org/10.6084/m9.figshare.1284177},
month = {October},
year = {2011}
}
@inproceedings{Vogelstein2010d,
author = {Vogelstein, Joshua T and Priebe, Carey E and Burns, R and Vogelstein, R Jacob and Lichtman, J},
author+an = {1=highlight},
address = {DARPA Neural Engineeering, Science and Technology Forum, San Diego, CA, USA},
title = {Measuring and reconstructing the brain at the synaptic scale: towards a biofidelic human brain in silico},
url = {http://dx.doi.org/10.6084/m9.figshare.1285813},
month = {November},
year = {2010}
}
@inproceedings{Gray2010,
author = {Gray, William R and Vogelstein, Joshua T and Bogovic, J and Carass, A and Prince, J L and Landman, B and Pham, D and Ferrucci, L and Resnick, S M and Priebe, Carey E and Vogelstein, R Jacob},
author+an = {2=highlight;1=trainee},
address = {DARPA Neural Engineering, Science and Technology Forum, San Diego, CA, USA},
title = {Graph-Theoretical Methods for Statistical Inference on MR Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1285815},
month = {November},
year = {2010}
}
@inproceedings{Vogelstein2010c,
author = {Vogelstein, Joshua T and Bogovic, J and Carass, A and Gray, WR and Prince, JL and Landman, B and Pham, D and Ferrucci, L and Resnick, SM and Priebe, Carey E and Vogelstein, RJ},
author+an = {1=highlight;4=trainee},
address = {Organization for Human Brain Mapping, Barcelona, Spain},
title = {Graph-Theoretical Methods for Statistical Inference on MR Connectome Data},
url = {http://dx.doi.org/10.6084/m9.figshare.1285813},
month = {June},
year = {2010}
}
@inproceedings{Vogelstein2010b,
author = {Vogelstein, Joshua T and Vogelstein, RJ and Priebe, Carey E},
author+an = {1=highlight},
address = {CSHL conference on Neural Circuits, Cold Shore Harbor, NY, USA},
title = {A Neurocognitive Graph-Theoretical Approach to Understanding the Relationship Between Minds and Brains},
url = {http://dx.doi.org/10.6084/m9.figshare.1284694},
month = {March},
year = {2010}
}
@inproceedings{Vogelstein2010a,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Towards Confirming Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1284693},
month = {February},
year = {2010}
}
@inproceedings{Vogelstein2009b,
address = {NIPS Workshop on Connectivity Inference in Neuroimaging, Whistler, BC, Canada},
author = {Vogelstein, Joshua T and Mishchchenko, Y and Packer, A M and Machado, T A and Yuste, R and Paninski, L},
author+an = {1=highlight},
title = {Towards Confirming Neural Circuits from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285822},
month = {December},
year = {2009}
}
@inproceedings{Vogelstein2010e,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Towards Inferring Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285819},
month = {February},
year = {2010}
}
@inproceedings{Vogelstein2009c,
author = {Vogelstein, Joshua T and Mishchenki, Y and Packer, AM and Machado, TA and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Towards Inferring Neural Circuit Inference from Population Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285821},
month = {February},
year = {2009}
}
@inproceedings{Vogelstein2008a,
author = {Vogelstein, Joshua T and Babadi, B and Watson, BO and Yuste, R and Paninski, L},
author+an = {1=highlight},
address = {Society for Neuroscience, Washington DC, USA},
title = {From Calcium Sensitive Fluorescence Movies to Spike Trains},
url = {http://dx.doi.org/10.6084/m9.figshare.1285824},
month = {November},
year = {2008}
}
@inproceedings{Vogelstein2008c,
author = {Vogelstein, Joshua T and Babadi, B and Paninski, L},
author+an = {1=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Model-Based Optimal Inference of Spike-Times and Calcium Dynamics given Noisy and Intermittent Calcium-Fluorescence Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285826},
month = {February},
year = {2008}
}
@inproceedings{Vogelstein2008b,
author = {Vogelstein, Joshua T and Paninski, L},
author+an = {1=highlight},
address = {Integrative Approaches to Brain Complexity},
title = {Inferring Spike Trains, Learning Tuning Curves, and Estimating Connectivity from Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285827},
year = {2008}
}
@inproceedings{Vogelstein2007b,
author = {Vogelstein, Joshua T and Jedynak, B and Zhang, K and Paninski, L},
author+an = {1=highlight},
address = {Society for Neuroscience, San Diego, CA, USA},
title = {Inferring Spike Trains, Neural Filters, and Network Circuits from in vivo Calcium Imaging},
url = {http://dx.doi.org/10.6084/m9.figshare.1285846},
month = {November},
year = {2007}
}
@inproceedings{Vogelstein2007a,
author = {Vogelstein, Joshua T and Zhang, K and Jedynak, B and Paninski, L},
author+an = {1=highlight},
address = {COSYNE, Salt Lake City, UT, USA},
title = {Maximum Likelihood Inference of Neural Dynamics under Noisy and Intermittent Observations using Sequential Monnte Carlo EM Algorithms},
url = {http://dx.doi.org/10.6084/m9.figshare.1285828},
month = {February},
year = {2007}
}
@inproceedings{Vogelstein2004,
author = {Vogelstein, Joshua T and Zhang, K},
author+an = {1=highlight},
address = {Society for Neuroscience, San Diego, CA, USA},
title = {A novel theory for simultaneous representation of multiple dynamic states in hippocampus},
year = {2004}
}
@inproceedings{Vogelstein2002,
author = {Vogelstein, Joshua T and Snyder, LH and Warchol, M and Angelaki, DE},
author+an = {1=highlight},
address = {Society for Neuroscience, Orlando, FL, USA},
title = {Up-down asymmetry in memory guided saccadic eye movements are independent of head orientation in space},
year = {2002}
}
@inproceedings{Vogelstein2002,
author = {Vogelstein, Joshua T and Snyder, LH and Warchol, M and Angelaki, DE},
author+an = {1=highlight},
address = {Society for Neuroscience, Orlando, FL, USA},
title = {Up-down asymmetry in memory guided saccadic eye movements are independent of head orientation in space},
year = {2002}
}
@inproceedings{Sparse2015,
author = {Chen, Shaojie and Liu, Kai and Yuguang, Yang and Seonjoo, Lee and Lindquist, Martin and Caffo, Brian and Vogelstein, Joshua T},
author+an = {1=trainee;7=highlight},
address = {Figshare},
title = {A Sparse High Dimensional State-Space Model with an Application to Neuroimaging Data},
year = {2015},
url = {https://figshare.com/articles/A_Sparse_High_Dimensional_State_Space_Model_with_an_Application_to_Neuroimaging_Data/1515020}
}
@inproceedings{Design2015,
author = {Wang, Shangsi and Yang, Zhi and Zuo, Xi-Nian and Milham, Michael and Craddock, Cameron and Priebe, Carey E. and Vogelstein, Joshua T.},
author+an = {1=trainee;7=highlight},
address = {Figshare},
title = {Optimal Design for Discovery Science: Applications in Neuroimaging},
year = {2015},
url = {https://figshare.com/articles/Optimal_Design_for_Discovery_Science_Applications_in_Neuroimaging/1515021}
}
@inproceedings{XBrain2015,
author = {Deyer, Eva L. and Fernandes, Hugo L. and Roncal, Will Gray and Gursoy, Doga and Vogelstein, Joshua T and Xiao, Xianghui and Jacobsen, Chris and Kording, Konrad P. and Kasthuri, Narayanan},
author+an = {5=highlight;3=trainee},
address = {Figshare},
title = {X-Brain: Quantifying Mesoscale Neuroanatomy Using X-ray Microtomography},
year = {2015},
url = {https://figshare.com/articles/X_Brain_Quantifying_Mesoscale_Neuroanatomy_Using_X_Ray_Microtomography/1585163}
}
@inproceedings{Allen2015synaptome,
author = {Smith, Stephen J. and Burns, Randal and Chevillet, Mark and Lein, Ed and Sapiro, Guillermo and Seeley, William and Trimmer, James and Vogelstein, Joshua T and Weinberg, Richard},
author+an = {8=highlight},
address = {Society for Neuroscience, Chicago, IL, USA},
title = {The Open Synaptome Project: Toward a Microscopy-Based Platform for Single-synapse Analysis of Diverse Populations of CNS Synapses},
year = {2015},
month = {October},
url = {https://figshare.com/articles/Open_Synaptome_Project/1585165}
}
@inproceedings{Vogelstein2015sfn,
author = {Vogelstein, Joshua T},
author+an = {1=highlight},
address = {Society for Neuroscience, Chicago, IL, USA},
title = {Open Connectome Project \& NeuroData: Enabling Data-Driven Neuroscience at Scale},
year = {2015},
month = {October},
url = {https://figshare.com/articles/NeuroData_amp_The_Open_Connectome_Project_Enabling_Big_Data_Neuroscience_at_Scale/1585167}
}