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cannot find shared library (libhdf5.so.10) #1142

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claudiacarter opened this issue Jul 22, 2024 · 0 comments
Open

cannot find shared library (libhdf5.so.10) #1142

claudiacarter opened this issue Jul 22, 2024 · 0 comments

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@claudiacarter
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Hi,

Apologies if this is not after all a nanopolish issue, I have followed the instructions (git clone, make) on linux OS. Installation seems to go fine (with all the expected warnings etc) but when I then try to use it (e.g. nanopolish --version) it errors with "nanopolish: error while loading shared libraries: libhdf5.so.10: cannot open shared object file: No such file or directory". When I use find on "libhdf5*" within the installed nanopolish directory it only turns up the following:

./hdf5-1.8.14/config/cmake/libhdf5.settings.cmake.in
./hdf5-1.8.14/src/libhdf5.settings
./hdf5-1.8.14/src/libhdf5.la
./hdf5-1.8.14/src/.libs/libhdf5.so.9.0.0
./hdf5-1.8.14/src/.libs/libhdf5.so.9
./hdf5-1.8.14/src/.libs/libhdf5.so
./hdf5-1.8.14/src/.libs/libhdf5.la
./hdf5-1.8.14/src/.libs/libhdf5.lai
./hdf5-1.8.14/src/.libs/libhdf5.a
./hdf5-1.8.14/src/libhdf5.settings.in
./lib/libhdf5.so.9.0.0
./lib/libhdf5.settings
./lib/libhdf5.so.9
./lib/libhdf5.so
./lib/libhdf5.la
./lib/libhdf5.a

I'm not sure what I'm missing here? Any help appreciated!

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