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Remove dependence on TIFFs for parameter extraction #32

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rthiermann opened this issue May 23, 2023 · 2 comments
Open

Remove dependence on TIFFs for parameter extraction #32

rthiermann opened this issue May 23, 2023 · 2 comments
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@michaels10

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@rthiermann
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Currently several widgets rely on the presence of the TIFF files to infer the number of FOVs, imaging channels, etc. However since the TIFFs are space intensive users may want to remove the folder after the initial analysis run. Later widgets should infer FOVs and channels from a separate params file.
@michaels10
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After commit 10132fb specs is now used by default to get the FOVs (and the TIFFs are used as fallback)

What do you think the best option is for imaging channels and timeranges? I'm thinking just a couple more entries to the specs yaml file.

@michaels10 michaels10 self-assigned this Jul 4, 2023
@rthiermann
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self-reminder here to switch pickchannels to read in parameters from the channel folder, not from specs.

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@michaels10 @rthiermann