tiffslide changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased - ...

[1.10.1] - 2022-11-09

Fixed

tiffslide: support .getitems() fetching via ReferenceFileSystem

1.10.0 - 2022-10-07

Added

tiffslide: parse additional hamamatsu specific tags

Fixed

tiffslide: fix bug in TiffSlide.get_best_level_for_downsample

1.9.0 - 2022-09-18

Added

tiffslide: support single-channel 16bit svs/tiff files

1.8.1 - 2022-09-13

Fixed

tiffslide._zarr: unwrap the compatibility shim correctly on py37

1.8.0 - 2022-08-31

Added

tiffslide: allow limiting worker threads via env TIFFSLIDE_NUM_DECODE_THREADS

1.7.0 - 2022-08-23

Added

tiffslide._zarr: added experimental support for getting chunk sizes

1.6.0 - 2022-08-15

Changed

tiffslide: remove old svs metadata parsing compatibility patch

1.5.0 - 2022-07-25

Fixed

tiffslide: prevent deprecation warning with ANTIALIAS for pillow>=9.1.0

Changed

tiffslide: don't require backports.cached_property on python3.7 anymore

1.4.0 - 2022-07-15

Added

tiffslide._kerchunk: added experimental support for kerchunk serialization

1.3.0 - 2022-06-30

Fixed

compatibility: fixed scn compositing (#36)

Added

TiffSlide().zarr_group property to replace .ts_zarr_grp in a future version

1.2.1 - 2022-06-16

Fixed

correct padding on nonzero levels (#38)

1.2.0 - 2022-04-03

Added

compatibility: add fallback support for non-tiff images via tiffslide.open_slide (#19)
make region padding configurable

Fixed

compatibility: support padding regions if out-of-bounds region requested (#27)
prevent numpy scalar overflows when using np.int32 coords in read_region (#29)

1.1.1 - 2022-03-31

Changes

change conda environment back to have conda devenv features in a compatibility way

Fixed

fixes py37 zarr/tifffile version compatibility issue for installs via pypi

1.1.0 - 2022-03-22

Added

support Leica SCN format
support using local images for tests via TIFFSLIDE_TEST_IMAGES env var

Changes

tiffslide: refactor .properties to simplify adding new formats
tiffslide.deepzoom: allow JPEG2000 LOSSY

1.0.1 - 2022-02-24

Fixed

tiffslide.deepzoom: support ycbc and rgb svs with and without jpeg tables

1.0.0 - 2022-01-31

Added

docs: add stable version installation instructions

Changed

tiffslide: remove deprecated private method (breaking)
tiffslide: remove obsolete internal state after using cached_property
docs: update and improve the README

Fixed

tiffslide: complete typing overload for read_region
tiffslide: change order of checks in _prepare_tifffile

0.3.0 - 2022-01-31

Added

support opening fsspec urlpaths and openfiles directly

Fixed

fix multithreaded access of uninitialized TiffSlide instance
tiffslide.deepzoom only use rgb colorfix if needed

0.2.2 - 2021-11-17

Fixed

fix black bar artifacts on computed intermediate levels in tiffslide.deepzoom
warnings regarding aliasing now report at the correct stack level

0.2.1 - 2021-09-28

Fixed

fix [XY]Resolution are rational numbers

0.2.0 - 2021-08-29

Added

add use_embedded kwarg to TiffSlide.get_thumbnail
add as_array kwarg to TiffSlide.get_region

Change

deprecate internal _read_region_as_array

0.1.1 - 2021-08-25

Fixed

fixed typing with newer versions of numpy
fixed missing mpp for generic tiffs that provide [XY]Resolution and ResolutionUnit
allow providing OpenFile objects to tiffslide.deepzoom

0.1.0 - 2021-07-06

Fixed

allow passing file objects
fix svs metadata handling (fixed upstream in tifffile)
fix single-level svs handling

Added

tests via pytest
type annotations and mypy type checking
TiffSlide.read_region_array method for reading np.ndarray

Changed

removed TiffSlide.ts_filename attribute

0.0.1 - 2021-03-18

Added

initial release of tiffslide and