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Add different substitution matrices for plotter #40

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krassowski opened this issue Dec 1, 2016 · 1 comment
Open

Add different substitution matrices for plotter #40

krassowski opened this issue Dec 1, 2016 · 1 comment
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1.0 beta

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We can start with the most poplar aminoacid substitution matrices (like PAM250) and adding a switch in command line arguments.
@krassowski krassowski added the easy label Dec 1, 2016
@krassowski krassowski added this to the 1.0 beta milestone Dec 1, 2016
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krassowski commented Dec 8, 2016 •
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this was nicely tackled in #48 PR. We should also add BLOSUM / other PAM matrices. Also an argument to choose the matrix will be needed. In the beginning we can set it to None and require user to choose one from provided. It will eliminate need to guess if a sequence consists of aminoacids or nuclotides (we don't have matrices for nucleotides)

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