This package provides a native R implementation of the cna python package by Reshef and Rumker.
To get started, install rcna
library(devtools)
install_github('korsunskylab/rcna')
And follow either
- The basic usage vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_R.ipynb
- The Seurat vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_Seurat.ipynb
Next,
- Read the paper at https://www.biorxiv.org/content/10.1101/2021.04.19.440534v1.full
- Read the python code at https://github.com/immunogenomics/cna