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Read config filename from workflow rather than assuming the default location #16

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Tracked by #291
jsbrittain opened this issue Jun 6, 2023 · 1 comment
Open
Tracked by #291
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enhancement New feature or request

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@jsbrittain
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The Builder module (builder_web.py) currently reads the configuration file for a workflow from the default config/config.yaml file. Instead, parse the workflow file for the configfile tag and source from there.

@jsbrittain jsbrittain added the bug Something isn't working label Jun 6, 2023
@jsbrittain jsbrittain changed the title Read configfile from workflow file (rather than assuming default location) Read config filename from workflow rather than assuming the default location Jun 6, 2023
@jsbrittain jsbrittain added enhancement New feature or request and removed bug Something isn't working labels Jun 6, 2023
@jsbrittain
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jsbrittain commented Sep 7, 2023

This issue is simplified by #89 as configurations are only loaded as needed, so the Snakefile can be loaded first, checked for config filenames and then used for config loading. Note that these filenames may need to propogate into the builder system, or be redetermined there.

@jsbrittain jsbrittain mentioned this issue Jul 3, 2024
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