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extract_vol_noc_nogui_post_LPA.m
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extract_vol_noc_nogui_post_LPA.m
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function extract_vol_noc_nogui_post_LPA(glob_path_input,prob_threshold)
%Find by dynamic path:
%glob_path = '/home/lars/Desktop/testing_dicomsort/new_lpa_nifti_test/*/T2_FLAIR_3D/ples_lpa_mt2_flair_3d.nii';
glob_path = glob_path_input;
files = dir(glob_path);
n_files = length(files);
%Initialise and iterate while correcting and merging:
files_fixed_paths = string(zeros(n_files,1));
cell_char_paths = cell(n_files,1);
for i = 1:n_files
disp(i);
files_fixed_paths(i) = join([string(fullfile(files(i).folder,files(i).name)),',1'],'');
%To merge all paths into one cell array for optimal handling.
%Cannot get all TLV and NoC in one CSV elseway.
cell_char_paths{i} = char(files_fixed_paths(i));
end
%Display:
disp(files_fixed_paths)
disp(cell_char_paths)
%Initiate and run job:
spm('defaults','fmri');
matlabbatch{1}.spm.tools.LST.tlv.data_lm = cell_char_paths;
matlabbatch{1}.spm.tools.LST.tlv.bin_thresh = prob_threshold;
spm_jobman('run', matlabbatch);
end