2022.8.0

What's Changed

• add downscale factor to run_palom() by @CameronFRWatson in #9

New Contributors

• @CameronFRWatson made their first contribution in #9

Full Changelog: v2022.3.3...v2022.8.0

2022.3.3

Major

• Fix incorrect block affine matrix calculation
• Fix brightfield flag checking logic

Full Changelog: v2022.3.1...v2022.3.3

2022.3.1

• Allow downsampling factor other than 4 to be used in pyramid.write_pyramid
• Temporary pin Zarr version (>=2.10.0, <2.11) until the issue in 2.11 is resolved

2022.2.0

Major

• Support non-pyramidal and non-tiled tiff
• Fix affine matrix computation to handle different pixel size target images
• Use entropy to detect whether an image is a brightfield or fluorescent image (was using dtype)

Minor

• Support single channel and RGB(A) input image
• Switch to cv2.INTER_AREA for better downsizing interpolation
• Open optional blurring and upsampling during block phase correlation

Full Changelog: v2021.12.0...v2022.02.0

2021.12.0

• Add hdx (H DAB) color deconvolution mode
• Add function to auto select thumbnail level for coarse alignment

2021.11.2

• Add helper to auto-generate configuration file for palom-svs run
• Refactor reader and align class logic
• Add color module

2021.11.1

• Add CLI for processing SVS files
• Writes QC files and log along with the OME-TIFF image

2021.11.0

• Initial pre-release, contains basic operations
• Currently can be used by scripting