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Pronto 2.57 cannot read EFO #35

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Zethson opened this issue Mar 13, 2024 · 3 comments
Closed

Pronto 2.57 cannot read EFO #35

Zethson opened this issue Mar 13, 2024 · 3 comments
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Zethson commented Mar 13, 2024

FAILED tests/entities/test_experimentalfactor.py::test_parse_efo_term - ValueError: undeclared synonym type: http://purl.obolibrary.org/obo/mondo#ABBREVIATION

Potentially due to a new Pronto release on Feb 21, 2024?
@Zethson Zethson self-assigned this Mar 13, 2024
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Zethson commented Mar 13, 2024

Apparently they tackled althonos/pronto#218

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Zethson commented Mar 13, 2024

Reported here: althonos/pronto#219

@Zethson Zethson transferred this issue from laminlabs/bionty-base Aug 7, 2024
@Zethson Zethson changed the title FAILED tests/entities/test_experimentalfactor.py::test_parse_efo_term - ValueError: undeclared synonym type: http://purl.obolibrary.org/obo/mondo#ABBREVIATION Pronto 2.57 cannot read EFO Aug 20, 2024
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Zethson commented Sep 16, 2024

Currently, the issue is actually with EFO.

@Zethson Zethson closed this as completed Sep 16, 2024
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