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TestData.py
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TestData.py
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# 使用UTF-8标准编码避免中文乱码
# -*- coding: UTF-8 -*-
import sys
import os
import numpy as np
from PyQt5.QtWebEngineWidgets import QWebEngineView
from PyQt5.QtWidgets import QDialog, QApplication, QAbstractItemView, QTableView, QWidget, QComboBox,QHBoxLayout, QFrame, \
QVBoxLayout, QPushButton
from PyQt5.QtGui import QStandardItemModel, QStandardItem
from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QUrl
from UI.Ui_TestWindow import Ui_Dialog
from UI.Ui_pvalueWindow import Ui_p_diag
import scipy.stats as stats
# 模块
from Util.Common import get_sql_connection, get_logger, show_error_message
class PDialog(QDialog):
def __init__(self, parent=None):
#继承所有dialog的方法
super(PDialog, self).__init__(parent)
#设置ui
self.__UI = Ui_p_diag()
self.__UI.setupUi(self)
class TestExam(QDialog):
def __init__(self, parent=None):
# 继承所有dialog的方法
super(TestExam, self).__init__(parent)
self.p_value = None
self.data_list = []
self.connection = None
self.cursor = None
self.logger = None
self.set_connection_cursor()
self.set_logger()
self.__UI = Ui_Dialog()
self.__UI.setupUi(self)
@pyqtSlot()
def on_btn_help_clicked(self):
dialog = PDialog(self)
dialog.setAttribute(Qt.WA_DeleteOnClose)
dialog.show()
@pyqtSlot()
def on_pushButton_clicked(self):
self.group = self.__UI.comboBox_group.currentText()
self.project = self.__UI.comboBox_data.currentText()
self.method = self.__UI.comboBox_method.currentText()
#先取数据
self.get_data(self.group,self.project,self.method)
if self.p_value < 0.05:
text = '<0.05'
else:
text = str(np.round(self.p_value,3))
self.__UI.label_result.setText(text)
##---------------------------------函数实现-----------------------
def get_data(self,group,project,method):
if group == 'VWD类型':
x_group = ['1','2A','2B','2M','2N','3']
test_data = []
for x in x_group:
if(project!='年龄'):
sql = """SELECT Exam_table.%s FROM Diagnosis_table INNER JOIN Exam_table ON Diagnosis_table.patient_ID=Exam_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Exam_table.%s is not null""" % (project,'vwd_type',x,project)
else:
sql = """SELECT Patient_table.%s FROM Diagnosis_table INNER JOIN Patient_table ON Diagnosis_table.patient_ID=Patient_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Patient_table.%s is not null""" % ("Age", 'vwd_type', x,"Age")
self.cursor.execute(sql)
data = [i[0] for i in self.cursor.fetchall()]
test_data.append(data)
self.data_list = test_data
if method == 'ANOVA':
f,self.p_value = stats.f_oneway(self.data_list[0],self.data_list[1],self.data_list[2],self.data_list[3],self.data_list[4],self.data_list[5])
print(f,self.p_value)
elif method == 'Kruskal-Wallis':
s,self.p_value = stats.kruskal(self.data_list[0],self.data_list[1],self.data_list[2],self.data_list[3],self.data_list[4],self.data_list[5])
else:
show_error_message(self, "请选择正确的方法")
elif group == '血友病类型':
x_group = ['A','B','VWD']
test_data = []
for x in x_group:
if (project != '年龄'):
sql = """SELECT Exam_table.%s FROM Diagnosis_table INNER JOIN Exam_table ON Diagnosis_table.patient_ID=Exam_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Exam_table.%s is not null """ % (project, 'haemophilia_type', x,project)
else:
sql = """SELECT Patient_table.%s FROM Diagnosis_table INNER JOIN Patient_table ON Diagnosis_table.patient_ID=Patient_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Patient_table.%s is not null """ % ("Age", 'haemophilia_type', x,project)
self.cursor.execute(sql)
data = [i[0] for i in self.cursor.fetchall()]
test_data.append(data)
self.data_list = test_data
if method == 'ANOVA':
f,self.p_value = stats.f_oneway(self.data_list[0],self.data_list[1],self.data_list[2])
elif method == 'Kruskal-Wallis':
s,self.p_value = stats.kruskal(self.data_list[0],self.data_list[1],self.data_list[2])
else:
show_error_message(self, "请选择正确的方法")
elif group == '出血/血栓':
x_group = ['出血病','x血栓病']
test_data = []
for x in x_group:
if (project != '年龄'):
sql = """SELECT Exam_table.%s FROM Diagnosis_table INNER JOIN Exam_table ON Diagnosis_table.patient_ID=Exam_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Exam_table.%s is not null """ % (project, 'binary_type', x,project)
else:
sql = """SELECT Patient_table.%s FROM Diagnosis_table INNER JOIN Patient_table ON Diagnosis_table.patient_ID=Patient_table.patient_ID
WHERE Diagnosis_table.%s='%s' and Patient_table.%s is not null""" % (
"Age", 'binary_type', x,"Age")
self.cursor.execute(sql)
data = [i[0] for i in self.cursor.fetchall()]
test_data.append(data)
self.data_list = test_data
if method == 'T-test':
f, self.p_value = stats.ttest_ind(self.data_list[0], self.data_list[1])
elif method == 'Mann-Whitney':
s, self.p_value = stats.kendalltau(self.data_list[0], self.data_list[1])
else:
show_error_message(self, "请选择正确的方法")
elif group == '血型':
x_group = ['A','B','AB','O']
test_data = []
for x in x_group:
if (project != '年龄'):
sql = """SELECT Exam_table.%s FROM Exam_table
WHERE Exam_table.%s='%s' and Exam_table.%s is not null""" % (
project, 'Blood_type', x,project)
else:
sql = """SELECT Patient_table.%s FROM Exam_table INNER JOIN Patient_table ON Exam_table.patient_ID=Patient_table.patient_ID
WHERE Exam_table.%s='%s' and Patient_table.%s is not null""" % (
"Age", 'Blood_type', x,"Age")
self.cursor.execute(sql)
data = [i[0] for i in self.cursor.fetchall()]
test_data.append(data)
self.data_list = test_data
if method == 'ANOVA':
f, self.p_value = stats.f_oneway(self.data_list[0], self.data_list[1], self.data_list[2],
self.data_list[3])
elif method == 'Kruskal-Wallis':
s, self.p_value = stats.kruskal(self.data_list[0], self.data_list[1], self.data_list[2],
self.data_list[3])
else:
show_error_message(self, "请选择正确的方法")
elif group == '性别':
x_group = ['女','男']
test_data = []
for x in x_group:
if (project != '年龄'):
sql = """SELECT Exam_table.%s FROM Patient_table INNER JOIN Exam_table ON Patient_table.patient_ID=Exam_table.patient_ID
WHERE Patient_table.%s='%s' and Exam_table.%s is not null""" % (
project, 'gender', x,project)
else:
sql = """SELECT Patient_table.%s FROM Patient_table
WHERE Patient_table.%s='%s' and Patient_table.%s is not null""" % (
"Age", 'gender', x,"Age")
self.cursor.execute(sql)
data = [i[0] for i in self.cursor.fetchall()]
test_data.append(data)
self.data_list = test_data
if method == 'T-test':
f, self.p_value = stats.ttest_ind(self.data_list[0], self.data_list[1])
elif method == 'Mann-Whitney':
s, self.p_value = stats.kendalltau(self.data_list[0], self.data_list[1])
else:
show_error_message(self, "请选择正确的方法")
#--------数据库相关函数-------
# 设置cursor和connection
def set_connection_cursor(self) -> None:
self.connection = get_sql_connection()
self.cursor = self.connection.cursor()
# 设置日志处理器
def set_logger(self) -> None:
self.logger = get_logger("my_logger")
def record_debug(self, debug_message: str) -> None:
self.logger.debug("语句错误，错误原因为{}".format(debug_message))