-
Notifications
You must be signed in to change notification settings - Fork 12
/
NEWS.rmd
2095 lines (1454 loc) · 52 KB
/
NEWS.rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
---
title: "NEWS-ContDataQC"
output: github_document
#md_document:
# variant: markdown_github
---
<!-- NEWS.md is generated from NEWS.Rmd. Please edit that file -->
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "NEWS-"
)
```
```{r, echo = FALSE}
cat(paste0("Last Update: ",Sys.time()))
```
# Version History
## v2.0.7.9048
2024-12-27
* refactor: Fix typo in Report_QC.rmd, Issue #167
+ inst/rmd
+ inst/shiny-examples/ContDataQC/rmd
## v2.0.7.9047
2024-12-27
* fix: Update shinyalalert for HOBO reformat, Issue #164
+ Shiny removes empty directories, add 'remove.text' file before upload
* tests: Add code to library creation script to add temp file to HOBO folder
+ Avoid having empty directory removed during upload to ShinyApps.io
## v2.0.7.9046
2024-12-26
* fix: Update shinyalert for HOBO reformat for multiple files, Issue #164
## v2.0.7.9045
2024-12-26
* fix: Update link to Shinay 3c3_QCThresh_Eval
## v2.0.7.9044
2024-12-23
* refactor: Update Excel file in Shiny 3c3_QCThresh_Eval
## v2.0.7.9043
2024-12-23
* refactor: Update workflow step 2 text (3a1_About)
## v2.0.7.9042
2024-12-23
* refactor: Text edits of flags in Report_QC.rmd
* refactor: Update Report_QC.rmd in shiny rmd folder
## v2.0.7.9041
2024-12-23
* refactor: Update thresholds display table
+ DO Spike
+ Add DO Adj, DO % Sat, and Salinity
## v2.0.7.9040
2024-12-23
* refactor: Remove extra mainPanel on 3c (Main_QCThresh_EditThresh)
+ Reclaim blank screen space
+ Space reserved for mainPanel not being used
## v2.0.7.9039
2024-12-17
* docs: Add vignettes to inst folder so can link to from GitHub
## v2.0.7.9038
2024-12-17
* docs: Build vignettes
## v2.0.7.9037
2024-12-02
* fix: Update Shiny file upload parameter check to use names from config, Issue #166
## v2.0.7.9036
2024-11-14
* fix: Update USGS gage data retreival for midnight entries, Issue #165
+ Same as miniDOT Issue #163
## v2.0.7.9035
2024-11-04
* refactor: Add pop up on HOBOware reformat for date time conversion, Issue #164
+ Success and failure
## v2.0.7.9034
2024-10-18
* refactor: Add error message for bad files in miniDOT concatenate in Shiny app
## v2.0.7.9033
2024-06-26
* fix: Update minidoct_cat() function to display midnight values, Issue #163
* refactor: Update config file, Issue #162
+ threshold for flat tolerance sensor depth from 0.0 to 0.01
+ ext
- config.ORIG.R
- config.COOL.R
- config.WARM.R
- config.Lakes.metric.R
+ shiny-examples\ContDataQC\www
- Config_Default.R
- Config_default.zip
- Config_Lakes_meters.zip
- Config_Lakes_metric.R
- Config_Template.R
- Config_Template.zip
- Config.R
## v2.0.7.9032
2024-03-01
* refactor: Update Shiny app
+ typos
+ indents
+ replace some tables with figures
## v2.0.7.9031
2024-02-27
* refactor: Update Shiny app text and tables, Issue #156
* refactor: Update Shiny app exit links, Issue #159
## v2.0.7.9030
2024-02-20
* refactor: Text updates on most tabs of Shiny app
* refactor: Remove Troubleshooting info in Shiny app, except for Console
* refactor: Figures of tables to tables in Shiny app, Issue #157
## v2.0.7.9029
2024-01-31
* refactor: Shiny app add "exit" tags to html links, Issue #159
## v2.0.7.9028
2024-01-31
* refactor: Replace images in Shiny, Issue #157
## v2.0.7.9027
2024-01-31
* refactor: Apply revised USEPA template (2023-12-15), Issue #155
## v2.0.7.9026
2024-01-31
* refactor: Move version number from title to about, Issue #161
* refactor: Add file identifiers to download links, Issue #160
## v2.0.7.9025
2024-01-25
* refactor: QC function to move QC columns, Issue #154
+ Flag. and Comment.MOD cols next to measurement columns
+ Ignore Date, Time, and Date.Time
## v2.0.7.9024
2023-09-28
* refactor: Use USEPA template
## v2.0.7.9023
2023-09-18
* refactor: Update stats plots with legend
+ fun.Stats.R
+ fun.Stats.File.R
## v2.0.7.9022
2023-09-18
* fix: Change stats N from total records to non-NA records, Issue #140
+ length(x) to sum(!is.na(x))
+ SumStats.updated.R
+ fun.Stats.R
+ fun.Stats.File.R
+ fun.PeriodStats.R
## v2.0.7.9021
2023-09-15
* refactor: Add text for tab references instead of links
## v2.0.7.9020
2023-09-14
* refactor: Added config file display name
+ Main Functions - Run Functions
+ Main Functions - QC Thresholds - Upload Custom Thresholds
## v2.0.7.9019
2023-09-14
* refactor: Edits to Shiny tabs
## v2.0.7.9018
2023-09-13
* refactor: Update period stats plots with legend
+ inst\RMD\Report_PeriodStats.rmd
* fix: Update example code in PeriodStats
## v2.0.7.9017
2023-09-12
* refactor: Change widths on Edit Thresholds tab
+ Some boxes too small
## v2.0.7.9016
2023-09-11
* refactor: Shiny tab text updates
+ miniDOT concatenate
+ miniDOT reformat
+ Advanced (new tab)
+ Formatting Files
## v2.0.7.9015
2023-09-08
* refactor: Shiny tab text updates
+ Check Input
+ Main
+ Organize Files
+ HOBOware Reformat
* refactor: Rename Sensor File Modification to Automated Reformatting
+ Add About tab
## v2.0.7.9014
2023-09-08
* refactor: Update Thresholds tab order
* refactor: Add text to Main - Import tab
## v2.0.7.9013
2023-09-08
* refactor: Update formatminiDOT function to remove columns with all NA values
+ Fixes issue with ContDataQC QC function
## v2.0.7.9012
2023-08-31
* refactor: Update config (lakes) in library and Shiny, Issue #153
* refactor: Shiny app updates
+ Update some images
+ Update text
## v2.0.7.9011
2023-08-31
* refactor: Shiny app updates
+ Main tab name Troubleshoot to Troubleshooting
+ Date format box text on HOBOware reformat
+ Move QC Tips from Main Functions to About
## v2.0.7.9010
2023-08-31
* refactor: Update base config file, Issue #153
* refactor: Update ThresholdsCheckWorksheet links in Shiny, Issue #153
## v2.0.7.9009
2023-08-14
* style: Update formating in global.R
* refactor: Change order, locations, and names of tabs in Shiny app, Issue #152
## v2.0.7.9008
2023-08-11
* style: Update Report_SiteSummary spacing
## v2.0.7.9007
2022-12-22
* fix: Shiny custom edit thresholds
+ Change default config to version without env statement
## v2.0.7.9006
2022-12-22
* update: Update Shiny app
+ QC Thresholds, Edit Thresholds, Issue #148
## v2.0.7.9005
2022-09-22
* update: update Shiny app
+ Fix numbered tabs 7 and 8
## v2.0.7.9004
2022-09-22
* update: update Shiny app
+ Update links
+ Remove (comment out) EPA template
+ Rearrange Console and Test Data tabs
## v2.0.7.9003
2022-09-19
* update: update Shiny app
+ Update text
## v2.0.7.9002
2022-09-15
* update: update Shiny app
+ Change names of navbar tabs and order
## v2.0.7.9001
2022-09-15
* style: Use EPA Template for shiny app
## v2.0.7
2022-06-15
* refactor: Bump to whole version number
## v2.0.6.9028
2022-06-15
* refactor: Add dummy files to blank Shiny app folders to avoid being deleted
## v2.0.6.9027
2022-06-15
* refactor: Update readme examples to use remotes instead of devtools package
## v2.0.6.9026
2022-06-15
* feature: Add miniDOT functions to Shiny, Issue #141
## v2.0.6.9025
2022-06-07
* fix: Modify config.R for salinity, Issue #138
+ Update other copies in package
## v2.0.6.9024
2022-05-31
* fix: Modify flags so can handle all na, Issue #143
+ fun.QC.file.R
+ fun.QC.R
+ Report_QC.rmd
- Base package and Shiny
## v2.0.6.9023
2022-05-25
* refactor: Update minidot_cat function, Issue #141
+ Remove filename parameter and use serial number from input file
* feature: Add format minidot function, Issue #141
## v2.0.6.9022
2022-05-25
* refactor: Updates to minidot_cat function, Issue #141
* refactor: Add missing return value for help script line 937
## v2.0.6.9021
2022-05-25
* feature: Add miniDOT concatenate function, Issue #141
+ Modified compile_do_folder.R from mnsentinellakes
## v2.0.6.9020
2022-05-24
* refactor: Update Report_QC.rmd used in Shiny app, Issue #117
* feature: Prototype site data summary report, Issue #142
* feature: Add google analytics to Shiny app
## v2.0.6.9019
2022-05-17
* fix: Update Report_QC.rmd table statements with useNA = ifany, Issue #117
* fix: Add new parameters to QC routine
+ DO adj, Issue #117
+ DO pct sat, Issue #117
+ Salinity, Issue #138
## v2.0.6.9018
2022-05-11
* feature: Add salinity to config file, Issue #138
* feature: Add salinity to config.out RMD, Issue #138
## v2.0.6.9017
2022-05-11
* fix: Modify config file for DO percent saturation
## v2.0.6.9016
2022-04-14
* refactor: Add keywords internal to two new functions
* fix: Rebuild package so new functions included
* docs: Add Yadong Xu as contributor
## v2.0.6.9015
2022-04-14
* feature: Add new functions from Yadong for EMVL project
+ Pull request #137
## v2.0.6.9014
2022-01-18
* refactor: Update Tim's Threshold Analysis zip file
## v2.0.6.9013
2022-01-18
* fix: Update broken links in Shiny to Config_Lakes_Metric.R, Issue #132
+ Linux case sensitive and wasn't working online
* refactor: Update text for readability in Shiny for Edit Thresholds
## v2.0.6.9012
2022-01-17
* refactor: Update QC Thresholds tab text in Shiny, Issue #131
## v2.0.6.9011
2022-01-17
* refactor: Update QC Thresholds tab in Shiny, Issue #131
+ Change order and names of tabs
+ Add Evaluate code as a download
## v2.0.6.9010
2021-12-22
* fix: Updated custom config thresholds to handle quotes, Issue #130
* docs: Added Ben Block as contributor for work on custom thresholds
## v2.0.6.9009
2021-12-22
* fix: Duplicate entry in config file, Issue #130
+ Updated all versions in package and shiny folders
+ Chlorophylla spike thresholds duplicated
## v2.0.6.9008
2021-12-21
* feature: Shiny, add custom thresholds for config file, Issue #130
+ merge pull request
## v2.0.6.9007
2021-10-25
* refactor: Rename "master" branch to "main".
## v2.0.6.9006
2021-10-25
* fix: Update fun.Stats.R and fun.Stats.File.R to use WaterLevel instead of
GageHeight, Issue #124
## v2.0.6.9005
2021-06-25
* refactor: Update config file with changes to units.
+ Correct some that were not correct
* refactor: Update config copy script in data-raw
* docs: Add markdown package to DESCRIPTION Suggests
+ Needed to to avoid GitHub Action build failure when creating vignettes
## v2.0.6.9004
2021-06-25
* style: Shiny, update code style in ui, server, and global
+ Not all code just code relevant to current refactor item
* refactor: Shiny add all parameters to table on 4MainFunction, CheckInput tab
+ Issue #127
## v2.0.6.9003
2021-06-23
* refactor: Updated version number in ui.R
## v2.0.6.9002
2021-06-23
* refactor: Shiny, pdated link locations to new repository (ShinyAppDocuments).
* style: Updated location of .rmd files to www/ folder.
## v2.0.6.9001
2021-06-23
* refactor: Shiny updates to app description text
## v2.0.6.9000
2021-06-23
* style: Removed Documents folder
+ Move to new repository
## v2.0.6
2021-06-21
* refactor: Create new version release
## v2.0.5.9109
2021-06-21
* refactor: Consolidate Shiny app updates from pull request, Issue #126
## v2.0.5.9108
2021-06-18
* refactor: Update Shiny
+ Final updates to section 7
## v2.0.5.9107
2021-06-18
* refactor: Update Shiny
+ Beginning updates to section 7
## v2.0.5.9106
2021-06-18
* refactor: Update Shiny
+ Updated section 8 text
## v2.0.5.9105
2021-06-18
* refactor: Update Shiny
+ Updated text in section 9
## v2.0.5.9104
2021-06-18
* refactor: Update Shiny
+ Updates to section 2 and section 3 - added sidebarpanels within tabsets rather than at bottom of pages
## v2.0.5.9103
2021-06-18
* refactor: Update Shiny
+ Updates sections 8 & 9.
## v2.0.5.9102
2021-06-18
* refactor: Update Shiny
+ Updated section 4a, 4b, and 5.
## v2.0.5.9101
2021-06-18
* refactor: Update Shiny
+ Updated 4a documents link
## v2.0.5.9100
2021-06-18
* refactor: Update Shiny
+ Made final updates to section 3a code and began section 4 code updates
## v2.0.5.9099
2021-06-18
* refactor: Update Shiny
+ Updated 3b files
## v2.0.5.9098
2021-06-18
* refactor: Update Shiny
+ Updated 3a section
## v2.0.5.9097
2021-06-18
* refactor: Update Shiny
+ Updated tab 6 information
## v2.0.5.9096
2021-06-18
* refactor: Update Shiny
+ Updated 2d HOBOware reformat
## v2.0.5.9095
2021-06-18
* refactor: Update Shiny
+ Added 2c info to rmd and documents
## v2.0.5.9094
2021-06-18
* refactor: Update Shiny
+ Updates to 2a and 2b text and data sources. Added files to documents folder.
## v2.0.5.9093
2021-06-18
* refactor: Update Shiny
+ Updated 2a text and created Documents folder
## v2.0.5.9092
2021-06-18
* refactor: Update Shiny
+ moved tab_Reformat.R under tab_2DataPrep subtab "Formatting files"
## v2.0.5.9091
2021-06-18
* refactor: Update Shiny
+ Update to ui.R subfiles - added all necessary new tab structures.
+ Added content to tab_1Overview using .rmd file.
## v2.0.5.9090
2021-06-18
* refactor: Update Shiny
+ Beginning updates in ui.R and subsequent code to accommodate application changes.
## v2.0.5.9089
2021-04-19
* refactor: Remove extra columns from QC routine, Issue #123
+ fun.QC.R
+ fun.QC.File.R
## v2.0.5.9088
2021-04-19
* refactor: Shiny, changes to tabs
## v2.0.5.9087
2021-04-19
* refactor: Shiny
+ Rearrange tabs
+ Split out Advanced tab into Console, Config, and Hobo
## v2.0.5.9086
2021-04-02
* style: Fix spelling, devtools::spell_check()
+ README
+ NEWS
+ fun.parseID.R
+ fun.Report.File.R
+ Vignette_ContDataQC.Rmd
+ Vignette_Config.RMD
+ fun.GageData.R
+ Vignette_Lakes.Rmd
* refactor: Reknit files
+ README
+ Vignettes
* style: Fix items from goodpractice::gp()
+ Trim lines to 80 characters
- CompSiteCDF.R
- test_export_rLakeAnalyzer.R
- RBIcalc.R
- format.Hobo.R
- fun.Helper.R
- Export.IHA.R
- Export.StreamThermal.R
- fun.CustomConfig.R
- fun.PeriodStats.R
- fun.Stats.R (partial)
- fun.DateFormat.R (partial)
+ Replace '=' with '<-'
- fun.Helper.R
+ Change T or F to TRUE or FALSE
- CompSiteCDF.R
## v2.0.5.9085
2021-03-31
* feature: Add custom config with metric units for Lakes, Issue #119
+ extdata\config.Lakes.metric.R
## v2.0.5.9084
2021-02-24
* feature: Shiny formatHobo add inputselect for date format, Issue #117
* refactor: Shiny server.R remove full.names from zip routine preventing
proper construction of download zip file, Issue #109
## v2.0.5.9083
2021-02-23
* refactor: Fix date in example reformatHobo for DO file, Issue #117
* refactor: Update reformatHobo date time conversion to account for no seconds
and 2 vs 4 digit years, Issue #117
## v2.0.5.9082
2021-02-23
* refactor: Shiny server, zip files add -j to strip folder names, Issue #109
* feature: Add additional DO parameters to config, Issue #117
* refactor: Update other versions of config, Issue #117
* docs: Update README install directions
* docs: README, trim lines to 80 characters
* docs: Move planned updates from NEWS to README
* refactor: Update Report_Config.rmd for new DO parameters, Issue #117
* refactor: Update Report_Config.rmd so sensor depth and water level are next
to each other
* refactor: Copy updated Report_Config.rmd to Shiny app, Issue #117
* feature: Add additional DO parameters (n=3) to reformatHobo function
, Issue #117
## v2.0.5.9081
2021-02-08
* refactor: Rework logger deployment start/end to use first non-NA date time
instead of first and last row; Issue #107
+ fun.QC.R
+ fun.QC.File.R
## v2.0.5.9080
2021-02-05
* style: Trim lines and fix spelling, fun.DateTimeFormat
## v2.0.5.9079
2021-02-04
* refactor: Update config spike flags for water level, Issue #116
+ Update other versions of config
## v2.0.5.9078
2021-02-04
* refactor: Update Config_Template.zip in Shiny, Issue #116
* docs: Retain NEWS.md for pkgdown to build changelog
## v2.0.5.9077
2021-02-04
* refactor: Update thresholds in config.R for sensor depth, Issue #116
## v2.0.5.9076
2021-02-04
* refactor: Modify "gross" check for water level, sensor depth, and discharge
, Issue #113
+ Was only checking for negative values
+ Set to evaluate like all other measured values
+ fun.Helper.R, fun.CalcQCStats()
* refactor: Update config.R comments for gross check as above, Issue #113
+ Update other copies of config
* refactor: Add missing spike thresholds for water level, config.R
* refactor: Set water level tests to values for sensor depth
## v2.0.5.9075
2021-01-27
* feature: Begin updates to add comparison of deployment periods, Issue #108
+ Add helper functions for rquery.t.test()
* feature: Add MonthDay to data during QC operation, Issue #111
* style: Trim some lines to 80 characters
+ fun.Stats.R
## v2.0.5.9074
2021-01-25
* docs: Update example in ContDataQC for aggregating lake/depth files, Issue #85
## v2.0.5.9073
2021-01-22
* refactor: Change ContDataQC() parameter fun.AddDeployCol from default FALSE to
TRUE
+ Shiny app will now auto add the deployment field
## v2.0.5.9072
2021-01-21
* refactor: Report_QC.rmd, add Water Level vs. Water Temp plots, Issue #110
* style: Report_QC.rmd, trim lines to 80 characters
* refactor: Copy Report_QC.rmd to shiny
## v2.0.5.9071
2021-01-21
* refactor: Revise Vignette_Config so it doesn't fail.
## v2.0.5.9070
2021-01-21
* refactor: Replace getwd() with tempdir() in examples
+ export_rLakeAnalyzer
+ PeriodStats
+ Export.IHA
of getwd() to save file
* feature: Create logger deployment column during QC routine, Issue #107
+ ContDataQC
+ fun.QC
+ fun.QC.File
* feature: Add logger deployment to config.R, Issue #107
+ myName.LoggerDeployment
+ myName.LoggerDeployment.start
+ myName.LoggerDeployment.end
+ Added to myNames.Order (add after DateTime)
* style: Trim lines to 80 characters
+ Export.rLakeAnalyzer
+ Vignette_Config
+ ContDataQC_Vignette
* refactor: Rename ContDataQC_Vignette to Vignette_ContDataQC
* refactor: Update config.R
* style: Updates to config.R, make order of Air and Water Pressure consistent
* refactor: Create data-raw file to propagate changes in config.R to shiny
* refactor: Update Vignette_Config with changes to config.R
* refactor: Update Config.R and its dependent versions
+ inst\extdata\config.ORIG.R
+ inst\shiny-examples\ContDataQC\www\Config_Template.R
+ inst\shiny-examples\ContDataQC\www\Config_Template.zip
* refactor: Replace getwd() with tempdir()
+ Vignette_Lakes
+ Vignette_ContDataQC
* docs: Update examples in Vignette_ContDataQC
* docs: Update example in Export.IHA with text from ContDataQC
## v2.0.5.9069
2021-01-20
* tests: Add test for export_rLakeAnalyzer
## v2.0.5.9068
2021-01-18
* refactor: Add "RAW" columns for flags in QC step Issue #106
## v2.0.5.9067
2021-01-18
* refactor: Shiny server, turn off renameAggOutput, Issue #104
## v2.0.5.9066
2021-01-15
* refactor: Add ability to Shiny to handle DOCX files to renameAggOutput in
global.R
* refactor: Redefine file name output for AggregateData.File
+ Use input file names to get date range
* docs: Remove docs folder for pkgdown site
+ Using GitHub Actions to build pkgdown in a different branch
* style: Trim to 80 character lines
+ zfun.AggregateData
+ zfun.AggregateData.File
## v2.0.5.9065
2021-01-14
* refactor: Update name of Config.zip to Config_Template.zip in shiny ui.R
## v2.0.5.9064
2021-01-14
* refactor: Rename custom config and add instructions, Issue #104
+ Won't work if use newenv() within custom file
* docs: Update text in config.out function about newenv()
## v2.0.5.9063
2021-01-13
* fix: Shiny app custom config not loading
## v2.0.5.9063
2021-01-13
* fix: Correct download of www/Config.zip
* fix: Replace unneeded concatenation without arguments
+ Aquarius_Data_Acquisition_PADEP
* style: Trim lines to 80 characters
+ fun.Config.Out
* fix: Example output to tempdir() rather than getwd()
+ fun.Config.Out
## v2.0.5.9062
2021-01-08
* refactor: Update version number display in Shiny app.
## v2.0.5.9061
2021-01-08
* feature: Update formatHobo to output water level, Issue #100
## v2.0.5.9060
2021-01-08
* refactor: Update CompSite.CDF 2nd example
## v2.0.5.9059
2021-01-08
* fix: Update CompSite.CDF so does not save to working directory
+ use tempdir in example and update code to use dir.output
* style: Trim to 80 character lines
+ fun.Helper.R
## v2.0.5.9058
2021-01-08
* refactor: Modify LakeID~Depth siteID to LakeID--Depth
+ File names with ~ are non-portable.
* style: Trim to 80 characters.
+ Vignette_Lakes
+ fun.ParseID
* refactor: Update help text in fun.ParseID for change in Lake ID delimiter
## v2.0.5.9057
2021-01-07
* feature: Modify formatHobo to use water level, issue #100
## v2.0.5.9056
2021-01-07
* feature: Add water level as a parameter for QC checks, Issue #100
* refactor: Remove gage height as a parameter for QC checks, Issue #100
* feature: Modify USGS download to change gage height to water level, Issue #100
+ Match HOBOware terminology (most of user base)
* style: Trim lines to 80 characters
+ config.R
+ fun.GageData.R
+ fun.Report.R
+ fun.Report.File.R
* fix: Update copies and version of config.R with edits, Issue #100
+ Package
- data\Config.R
- inst\extdata\config.COOL
- inst\extdata\config.ExcludeFailsFalse
- inst\extdata\config.ORIG
- inst\extdata\config.RMDdir
- inst\extdata\config.WARM
+ Shiny
- www\Config.R
- www\Config.zip
* feature: Update rmd files from GageHeight to WaterLevel
+ Report_Config
+ Report_QC
* refactor: Copy RMD files from package directory to shiny
* refactor: Remove unneeded concatenation of a constant
+ server.R
+ Export.rlakeAnalyzer.R
* feature: Change Gage Height to Water Level, fun.QC
* feature: Add Water Level, fun.QC.File
* refactor: Change getwd() to tempdir(), ContDataQC example
* refactor: Update ContDataQC example
+ getwd() to tempdir()
+ paste0() to file.path()
* fix: Fix typo in fun.Stats.File.R
+ seq_len(row... to seq_len(nrow...
* refactor: Remove use of installr package as is windows only
+ Move example text to details of ContDataQC function
## v2.0.5.9055
2021-01-04
* refactor: Add config_R.zip to shiny app in www folder
* refactor: server.R update fun.myReport.format to "" from "html"
## v2.0.5.9054
2021-01-04
* chore: Recreate pkgdown GitHub Action
## v2.0.5.9053
2021-01-04